View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_high_21 (Length: 357)
Name: NF17202_high_21
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_high_21 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 95761 - 95527
Alignment:
| Q |
1 |
catcagattgtgtcaaggttttcacaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggtt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95761 |
catcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggtt |
95662 |
T |
|
| Q |
101 |
aatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatgga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
95661 |
aatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatgga |
95562 |
T |
|
| Q |
201 |
attttggagtaagcactgaaattcaccggctcaca |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
95561 |
attttggagtaagcactgaaattcaccggctcaca |
95527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 87745 - 87511
Alignment:
| Q |
1 |
catcagattgtgtcaaggttttcacaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggtt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87745 |
catcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggtt |
87646 |
T |
|
| Q |
101 |
aatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatgga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |
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| T |
87645 |
aatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacgga |
87546 |
T |
|
| Q |
201 |
attttggagtaagcactgaaattcaccggctcaca |
235 |
Q |
| |
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||||||||||||| |||||||||||| |||||||| |
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| T |
87545 |
attttggagtaagaactgaaattcacaggctcaca |
87511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 87474 - 87405
Alignment:
| Q |
236 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
305 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
87474 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
87405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 95490 - 95440
Alignment:
| Q |
236 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95490 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
95440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40870521 - 40870755
Alignment:
| Q |
1 |
catcagattgtgtcaaggttttcacaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggtt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870521 |
catcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggtt |
40870620 |
T |
|
| Q |
101 |
aatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40870621 |
aatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatgga |
40870720 |
T |
|
| Q |
201 |
attttggagtaagcactgaaattcaccggctcaca |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
40870721 |
attttggagtaagcactgaaattcaccggctcaca |
40870755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40878538 - 40878772
Alignment:
| Q |
1 |
catcagattgtgtcaaggttttcacaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggtt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878538 |
catcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggtt |
40878637 |
T |
|
| Q |
101 |
aatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |
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| T |
40878638 |
aatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacgga |
40878737 |
T |
|
| Q |
201 |
attttggagtaagcactgaaattcaccggctcaca |
235 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |
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| T |
40878738 |
attttggagtaagaactgaaattcacaggctcaca |
40878772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 40878809 - 40878878
Alignment:
| Q |
236 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
305 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40878809 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
40878878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 40870792 - 40870842
Alignment:
| Q |
236 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870792 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
40870842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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