View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17202_high_24 (Length: 337)

Name: NF17202_high_24
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17202_high_24
NF17202_high_24
[»] chr7 (6 HSPs)
chr7 (19-324)||(36895025-36895317)
chr7 (24-104)||(1359744-1359825)
chr7 (26-101)||(28514606-28514682)
chr7 (26-104)||(19677066-19677145)
chr7 (63-93)||(26203125-26203155)
chr7 (42-99)||(46242554-46242611)
[»] chr4 (4 HSPs)
chr4 (100-209)||(31682225-31682334)
chr4 (24-99)||(41142262-41142338)
chr4 (26-73)||(9093654-9093701)
chr4 (41-73)||(21755961-21755993)
[»] chr1 (4 HSPs)
chr1 (27-101)||(37276617-37276692)
chr1 (23-99)||(5069771-5069848)
chr1 (47-101)||(48282857-48282912)
chr1 (27-102)||(5178807-5178883)
[»] chr2 (3 HSPs)
chr2 (32-101)||(9021550-9021620)
chr2 (23-104)||(7141182-7141263)
chr2 (26-99)||(1870462-1870536)
[»] chr3 (1 HSPs)
chr3 (27-104)||(44291194-44291271)
[»] scaffold1372 (1 HSPs)
scaffold1372 (27-101)||(1238-1312)
[»] chr5 (4 HSPs)
chr5 (25-101)||(3360643-3360720)
chr5 (26-101)||(22294055-22294130)
chr5 (23-102)||(1920711-1920791)
chr5 (32-99)||(30251921-30251989)
[»] chr8 (3 HSPs)
chr8 (26-100)||(20542458-20542533)
chr8 (74-102)||(34127787-34127815)
chr8 (47-99)||(39534107-39534159)
[»] chr6 (1 HSPs)
chr6 (46-102)||(6770925-6770982)
[»] scaffold0299 (1 HSPs)
scaffold0299 (46-102)||(17982-18038)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 36895025 - 36895317
Alignment:
Q  19 gtagcaccttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgcccgggggcactggttaacaagacccttattctttttcaagtcca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||| ||||||||||||||||||||||||||||||||||    
T  36895025 gtagcaccttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgc------gcattggttaacaagacccttattctttttcaagtcca 36895118  T
Q  119 ttttccaattatttacattatggaacataacatgcaccttaacttactacatatcagaggtgtactattttacttaggatacaattttcaaccttggatg 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36895119 ttttccaattattcacattatggaacataacatgcaccttaacttactacatatcagaggtgtactattttacttaggatacaattttcaaccttggatg 36895218  T
Q  219 agccataagcctaaaaagacataaactacacttggaacaagcaccggaaagctattgcagctacacaaaaaagtacacatagaaaccaaatatacactac 318  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36895219 agccataagcctaaaaagacat-------acttggaacaagcaccggaaagctattgcagctacacaaaaaagtacacatagaaaccaaatatacactac 36895311  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 1359744 - 1359825
Alignment:
Q  24 accttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagacccttatt 104  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||||  |  ||||||||||||||||||||||||    
T  1359744 accttatgtttccaagacaaaatttctattcatggattccttaaccaatgcccaagaagcactggttaacaagacccttatt 1359825  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 28514682 - 28514606
Alignment:
Q  26 cttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagaccctt 101  Q
    ||||| ||| ||||||| ||||||| |||||||||||||||| ||||||||   ||||||| |||||||||||||||    
T  28514682 cttatattttcaaggcataatttctttttatgggttccttaaacaatgcccttagggcacttgttaacaagaccctt 28514606  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 19677066 - 19677145
Alignment:
Q  26 cttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagacccttatt 104  Q
    ||||| ||| |||| |||||||||||||| | | ||||||||||||||||| | ||||| |||||| |||||||||||||    
T  19677066 cttatattttcaagacaaaatttctatttgtcgattccttaaccaatgccctgagggcattggttagcaagacccttatt 19677145  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 93
Target Start/End: Original strand, 26203125 - 26203155
Alignment:
Q  63 cttaaccaatgcccgggggcactggttaaca 93  Q
    |||||||||||||||||||||||||||||||    
T  26203125 cttaaccaatgcccgggggcactggttaaca 26203155  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 46242611 - 46242554
Alignment:
Q  42 aaaatttctatttatgggttccttaaccaatgcccgggggcactggttaacaagaccc 99  Q
    ||||||||||||||||  |||||||| |||| | | || |||||||||||||||||||    
T  46242611 aaaatttctatttatgaattccttaatcaattcaccggagcactggttaacaagaccc 46242554  T

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Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 100 - 209
Target Start/End: Original strand, 31682225 - 31682334
Alignment:
Q  100 ttattctttttcaagtccattttccaattatttacattatggaacataacatgcaccttaacttactacatatcagaggtgtactattttacttaggata 199  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||||||||| | ||||||| | |||||||| |||||| | |    
T  31682225 ttattctttttcaagtccattttccgattacttaaattatggaacataacgtgcaccttaacttactaaagatcagagttatactatttcacttagtaaa 31682324  T
Q  200 caattttcaa 209  Q
    || |||||||    
T  31682325 cagttttcaa 31682334  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 41142338 - 41142262
Alignment:
Q  24 accttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagaccc 99  Q
    ||||||| ||| |||| |||||||| |||| |||  ||||||||||||||||| |||||||||||||||||||||||    
T  41142338 accttattttttcaagacaaaatttttattcatgaattccttaaccaatgccccgggggcactggttaacaagaccc 41142262  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 9093654 - 9093701
Alignment:
Q  26 cttatgtttccaaggcaaaatttctatttatgggttccttaaccaatg 73  Q
    ||||| ||| ||||||||||||||| |||||||||||||||| |||||    
T  9093654 cttatattttcaaggcaaaatttctttttatgggttccttaaacaatg 9093701  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 21755961 - 21755993
Alignment:
Q  41 caaaatttctatttatgggttccttaaccaatg 73  Q
    ||||||||||||||||| |||||||||||||||    
T  21755961 caaaatttctatttatgagttccttaaccaatg 21755993  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 37276617 - 37276692
Alignment:
Q  27 ttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgc-ccgggggcactggttaacaagaccctt 101  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  37276617 ttatgtttccaagacaaaatttctattaatgggttccttaaccaatgctccgggggcactagttaacaagaccctt 37276692  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 5069771 - 5069848
Alignment:
Q  23 caccttatgtttccaaggcaaaatttctatttatgggttccttaaccaatg-cccgggggcactggttaacaagaccc 99  Q
    |||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| ||  ||| ||||||||||||||    
T  5069771 caccttatatttccaagacaaaatttctatttatgggtttcttaaccaatgtcccaggaacaccggttaacaagaccc 5069848  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 48282912 - 48282857
Alignment:
Q  47 ttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagaccctt 101  Q
    |||||||||| | ||||||||||| ||||| |||||||| ||||||||||||||||    
T  48282912 ttctatttatagattccttaaccagtgccccgggggcaccggttaacaagaccctt 48282857  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 5178807 - 5178883
Alignment:
Q  27 ttatgtttccaaggcaaaatttctatttatgggttccttaaccaatg-cccgggggcactggttaacaagaccctta 102  Q
    ||||||||||||| |||  |||||| || ||| ||||||||| | || ||||| |||| ||||||||||||||||||    
T  5178807 ttatgtttccaagacaatttttctacttttggattccttaacgagtgtcccggaggcattggttaacaagaccctta 5178883  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 9021550 - 9021620
Alignment:
Q  32 tttccaaggcaaaatttctatttatgggttccttaaccaatg-cccgggggcactggttaacaagaccctt 101  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  9021550 tttccaagacaaaatttctagttatgggttccttaaccaatgccccgggggcactgattaataagaccctt 9021620  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 7141182 - 7141263
Alignment:
Q  23 caccttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgcccgggggcactggttaacaagacccttatt 104  Q
    |||||||||||| |||| ||||||||||||| || |  |||||||||||||| | ||||||| | |||||||||||| ||||    
T  7141182 caccttatgttttcaagacaaaatttctattcattgaatccttaaccaatgcgctggggcaccgattaacaagacccatatt 7141263  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 1870536 - 1870462
Alignment:
Q  26 cttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagaccc 99  Q
    ||||| ||| |||| |||| ||||||||||| | ||||||||||| ||||| | |||||||||||| ||||||||    
T  1870536 cttatattttcaagacaaattttctatttatagtttccttaaccattgccctgagggcactggttagcaagaccc 1870462  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 44291271 - 44291194
Alignment:
Q  27 ttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgcccgggggcactggttaacaagacccttatt 104  Q
    |||| |||||||| || || |||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||    
T  44291271 ttatatttccaagacagaaattctatttatagattccttaaccagtgccccggggcactggttaacaagacccttatt 44291194  T

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Target: scaffold1372 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 1312 - 1238
Alignment:
Q  27 ttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgcccgggggcactggttaacaagaccctt 101  Q
    |||| |||||||| || || |||||||||| | ||||||||||  ||||| ||||||| ||||||||||||||||    
T  1312 ttatatttccaagacagaaattctatttatagattccttaacccgtgccccggggcaccggttaacaagaccctt 1238  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 3360720 - 3360643
Alignment:
Q  25 ccttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgc-ccgggggcactggttaacaagaccctt 101  Q
    |||||| |||||||  |||||||| ||||||||| ||||||||||||||| | ||| ||| |||||||||||| ||||    
T  3360720 ccttatatttccaacacaaaatttttatttatggattccttaaccaatgctctgggtgcattggttaacaagagcctt 3360643  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 22294055 - 22294130
Alignment:
Q  26 cttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgcccgggggcactggttaacaagaccctt 101  Q
    ||||| |||||||| |||||||||||||| | | ||||||||||| ||| | | ||||||| ||| ||||||||||    
T  22294055 cttatatttccaagacaaaatttctatttgtagattccttaaccattgctctgaggcactgtttagcaagaccctt 22294130  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 1920791 - 1920711
Alignment:
Q  23 caccttatgtttccaaggcaaaatttctatttatgggttccttaaccaat-gcccgggggcactggttaacaagaccctta 102  Q
    |||||||| |||| ||| ||||||||||||| || | || ||||||||||  ||| ||||||| |||||||||||| ||||    
T  1920791 caccttatatttctaagacaaaatttctattcatagatttcttaaccaataccccaggggcacgggttaacaagactctta 1920711  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 30251989 - 30251921
Alignment:
Q  32 tttccaaggcaaaatttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagaccc 99  Q
    |||||||| ||||||||||||| ||||  |||||||||| |||||   |||||||||||| ||||||||    
T  30251989 tttccaagacaaaatttctattaatggaatccttaaccattgcccttagggcactggttaccaagaccc 30251921  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 20542458 - 20542533
Alignment:
Q  26 cttatgtttccaaggcaaaatttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagaccct 100  Q
    ||||| |||||||| | |||||||||||| | | ||||||||||||||||| | |||||||| ||| |||||||||    
T  20542458 cttatatttccaagacgaaatttctatttgtagattccttaaccaatgccctgagggcactgtttagcaagaccct 20542533  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 34127787 - 34127815
Alignment:
Q  74 cccgggggcactggttaacaagaccctta 102  Q
    |||||||||||||||||||||||||||||    
T  34127787 cccgggggcactggttaacaagaccctta 34127815  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 39534159 - 39534107
Alignment:
Q  47 ttctatttatgggttccttaaccaatgcccgggggcactggttaacaagaccc 99  Q
    ||||| |||| | ||| |||||| |||||||||||||| ||||||||||||||    
T  39534159 ttctaattatagattctttaacccatgcccgggggcaccggttaacaagaccc 39534107  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 6770925 - 6770982
Alignment:
Q  46 tttctatttatgggttccttaaccaatgccc-gggggcactggttaacaagaccctta 102  Q
    ||||||||||| | |||||||||||||||||   |||||||||||| |||||||||||    
T  6770925 tttctatttatagtttccttaaccaatgccctaagggcactggttagcaagaccctta 6770982  T

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Target: scaffold0299 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 18038 - 17982
Alignment:
Q  46 tttctatttatgggttccttaaccaatgcccgggggcactggttaacaagaccctta 102  Q
    ||||||||||| | |||||||||||||| | | ||||||||  ||||||||||||||    
T  18038 tttctatttatagtttccttaaccaatgtctgagggcactgaataacaagaccctta 17982  T

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