View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17202_high_3 (Length: 761)

Name: NF17202_high_3
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17202_high_3
NF17202_high_3
[»] chr2 (6 HSPs)
chr2 (415-740)||(14658540-14658863)
chr2 (84-235)||(14662328-14662476)
chr2 (319-412)||(45336618-45336708)
chr2 (316-399)||(14662651-14662731)
chr2 (84-234)||(45338572-45338715)
chr2 (84-234)||(45336260-45336403)
[»] chr3 (7 HSPs)
chr3 (84-237)||(48027288-48027438)
chr3 (84-237)||(48025108-48025258)
chr3 (84-235)||(48023999-48024147)
chr3 (84-237)||(48024548-48024698)
chr3 (84-234)||(28784514-28784657)
chr3 (159-234)||(5354612-5354686)
chr3 (159-234)||(48707695-48707769)
[»] chr7 (3 HSPs)
chr7 (84-232)||(13111118-13111263)
chr7 (84-217)||(13108840-13108970)
chr7 (316-412)||(13110845-13110939)
[»] chr5 (3 HSPs)
chr5 (319-412)||(32798365-32798455)
chr5 (84-234)||(32798007-32798150)
chr5 (84-234)||(32800319-32800462)
[»] chr8 (3 HSPs)
chr8 (319-412)||(44732202-44732292)
chr8 (84-234)||(44734153-44734296)
chr8 (84-146)||(44731842-44731904)
[»] chr6 (1 HSPs)
chr6 (84-146)||(6723461-6723523)
[»] chr1 (2 HSPs)
chr1 (85-146)||(9535257-9535318)
chr1 (84-234)||(1550157-1550300)
[»] chr4 (2 HSPs)
chr4 (84-235)||(7230963-7231108)
chr4 (84-234)||(22804610-22804755)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 415 - 740
Target Start/End: Original strand, 14658540 - 14658863
Alignment:
Q  415 tgatttttctagaactcccaccatggtcggaatatcatgacaacatgttattattattttttccttctctttttgaggtcaacacacttctccaaccagt 514  Q
    |||||||||||||| | ||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14658540 tgatttttctagaatttccaccgtggtcagaatttcatgacagcatgttattattattttttccttctctttttgaggtcaacacatttctccaaccagt 14658639  T
Q  515 gttgttagaaacaaagggcacatattcgatgatcatagcactaagttacttctgacctaattgatattccttttagctaaaaaccattatgtatgtttat 614  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  14658640 gttgttagaaacaaagggcacatattcgatgatcatagtactaagttacttttgacctaattgatattctttttagctaaaaatcattatgtatgcttat 14658739  T
Q  615 aaatttgattttacatgatcttgattctacaaaattgatttcagtgtaaatacatttacgttgctgctggttactcttgggtcacatataattggagagt 714  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||  || ||||||||||    
T  14658740 aaatttgattttgcatgatcttgattctacaaaattgatttcagtataaatacatttacattgttgctggttactcttgggtcac--attattggagagt 14658837  T
Q  715 ttcacataagaagttagacttataag 740  Q
    |||||||||||||| |||||| ||||    
T  14658838 ttcacataagaagtaagacttgtaag 14658863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 84 - 235
Target Start/End: Original strand, 14662328 - 14662476
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||||||||||||||    
T  14662328 taattaaagtgttgcttgtttatgtataagtgtcataattagatcgttgcttatttagtaagtaaaa---cagtccctaggtaatgatgtctattgttgc 14662424  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 235  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  14662425 taggtaataatgactagtgcttaagagtagatttcgtgcagatcttatgttc 14662476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 45336618 - 45336708
Alignment:
Q  319 tggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaattttgagggtgagagaaaaccagcaagaaaac 412  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  45336618 tggtatcaagagccccat--tgatcttaacggg-tctgtgaggttagaaaactagtgtaaaactttgagggtgagagaaaaccagcaagaaaac 45336708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 14662651 - 14662731
Alignment:
Q  316 acatggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaattttgagggtgagagaaaa 399  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||    
T  14662651 acatggtatcaagagccc--tattgatcttaacggg-tctatgaggttagaaaatcagtgtaaaattttgagggtgagagaaaa 14662731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 45338572 - 45338715
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  45338572 taattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 45338665  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  45338666 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 45338715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 45336260 - 45336403
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||| ||||||||||| || || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  45336260 taattaatgtgttgcttgtgtaagtttaagtgtcatatttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 45336353  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  45336354 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 45336403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 7e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 48027438 - 48027288
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||||||||||||      
T  48027438 taatttaagtgttgcttgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtccctaggtaatgatgtctattgttct 48027342  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 237  Q
    |||||||| |||||  |||||||||||||||||| ||| |||||||||||||||    
T  48027341 taggtaatgatgactagtgcttaagagtagatttagtgtagattttatgttcct 48027288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 48025258 - 48025108
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||       |  |||| || |||||||||||||||||      
T  48025258 taattaaagtgttgcttgtttatgtataaatgtcataattagattgttgcttatttagtaagt---aaaacaatcccaagttaatgatgtctattgttct 48025162  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 237  Q
    |||||||| |||||  |||||||||||||||||| ||| |||||||||||||||    
T  48025161 taggtaatgatgactagtgcttaagagtagatttagtgtagattttatgttcct 48025108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 48024147 - 48023999
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||       | ||||| ||||||||||||||| ||        
T  48024147 taattaaagtgttacttgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtcccaaggtaatgatgtctaatgaact 48024051  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 235  Q
    |||||||| |||||  |||||||||||||||||| |||||||||||||||||    
T  48024050 taggtaatgatgactagtgcttaagagtagatttagtgcagattttatgttc 48023999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 48024698 - 48024548
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||       | ||||| |||||||||||| |||||||      
T  48024698 taattaaaatgttgcatgtttatgtataagtgtcataattagattgttgcttatttagtaagt---aaaacagtcccaaggtaatgatgtttattgttct 48024602  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttcct 237  Q
    |||||||| |||||  |||||||| ||||||||| ||| |||||||||||||||    
T  48024601 taggtaatgatgactagtgcttaatagtagatttagtgtagattttatgttcct 48024548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 28784514 - 28784657
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||| |||||||||||||| || ||||||| ||| |||||| ||||||||||| ||||||         |||| ||||||||||||||||| |||      
T  28784514 taattaatgtgttgcttgtttaagtttaagtgttatagttagattgttgcttatttggtaagtaaga-----gtcc-taggtaatgatgtctatggttct 28784607  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    |||||||| |||||  ||| ||| |||||||||| ||||||||||||||||    
T  28784608 taggtaatgatgactagtgttta-gagtagatttagtgcagattttatgtt 28784657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 5354686 - 5354612
Alignment:
Q  159 cctaggtaatgatgtctattgttgctaggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    ||||||||||||||| ||| |||  ||||||||||||||  ||| ||| |||||||||| ||||||||||||||||    
T  5354686 cctaggtaatgatgtttatggttcttaggtaataatgactagtgttta-gagtagatttagtgcagattttatgtt 5354612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 48707769 - 48707695
Alignment:
Q  159 cctaggtaatgatgtctattgttgctaggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    ||||||||||||||||||| |||  |||||||| |||||  ||| |||| ||||||||| ||| ||||||||||||    
T  48707769 cctaggtaatgatgtctatggtttttaggtaatgatgactagtgtttaa-agtagatttagtgtagattttatgtt 48707695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 13111263 - 13111118
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||         ||||||||||||| ||||||||||||      
T  13111263 taattaaagtgttgcttgtttatgtagaagtgccataattagattgttgcttatttagtaagtaaaata---gtccctaggtaataatgtctattgttct 13111167  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatg 232  Q
    |||||||| |||||  |||||||||||||||||| ||||| ||||||||    
T  13111166 taggtaatgatgactagtgcttaagagtagatttagtgcaaattttatg 13111118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 13108970 - 13108840
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||       | ||||||||||||||||   |||||||      
T  13108970 taattaaagtgttgcttgtttatttataagtgtcataattagattgttgcttatttagtaagt---aaaacagtccctaggtaatgatacatattgttct 13108874  T
Q  184 taggtaataatgaccggtgcttaagagtagattt 217  Q
    | |||||| |||||  ||||||||||||||||||    
T  13108873 tgggtaatgatgactagtgcttaagagtagattt 13108840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 316 - 412
Target Start/End: Complemental strand, 13110939 - 13110845
Alignment:
Q  316 acatggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaat-tttgagggtgagagaaaaccagcaagaaaac 412  Q
    ||||||||||||||| ||  ||||||||||||| |  |||||||| ||||||||| |||||||||  ||| |||||||||||||||||||||||||||    
T  13110939 acatggtatcaagagtcc--tattgatcttaactga-tctgtgagattagaaaactagtgtaaaaaattttagggtgagagaaaaccagcaagaaaac 13110845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 32798365 - 32798455
Alignment:
Q  319 tggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaattttgagggtgagagaaaaccagcaagaaaac 412  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  32798365 tggtatcaagagccccat--tgatcttaacggg-tctgtgaggttagaaaactagtgtaaaactttgagggtgagagaaaaccagcaagaaaac 32798455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 32798007 - 32798150
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  32798007 taattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 32798100  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  32798101 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 32798150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 32800319 - 32800462
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  32800319 taattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 32800412  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  32800413 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 32800462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 44732202 - 44732292
Alignment:
Q  319 tggtatcaagagccccatattgatcttaacggggtctgtgaggttagaaaaccagtgtaaaattttgagggtgagagaaaaccagcaagaaaac 412  Q
    ||||||||||||||||||  ||||||||||||| ||||||||| |||||||| ||| || || |||||||||||||||||||||||||||||||    
T  44732202 tggtatcaagagccccat--tgatcttaacggg-tctgtgagggtagaaaactagtatagaactttgagggtgagagaaaaccagcaagaaaac 44732292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 44734153 - 44734296
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||| |||||||||||||| || ||||||||||| |||| | ||||||||||| ||||||         |||| ||||||||||||||||| |||      
T  44734153 taattaatgtgttgcttgtttaagtttaagtgtcatagttaggttgttgcttatttggtaagtaaga-----gtcc-taggtaatgatgtctatggttct 44734246  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    |||||||| |||||  ||| ||| |||||||||| ||||||||||||||||    
T  44734247 taggtaatgatgactagtgttta-gagtagatttagtgcagattttatgtt 44734296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 44731842 - 44731904
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 146  Q
    ||||||| |||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||    
T  44731842 taattaatgtgttgcttgtttaagtttaagtgtcatagttagattgttgcttatttggtaagt 44731904  T

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Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 6723461 - 6723523
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 146  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  6723461 taattaaagtgttgcttgtttaagtgtaagtgtcataattagattgttgcttatttagtaagt 6723523  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 9535257 - 9535318
Alignment:
Q  85 aattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagt 146  Q
    |||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||    
T  9535257 aattaatgtgttgcttgtttaagtttaagtgtcataattagattgttgcttatttggtaagt 9535318  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 1550157 - 1550300
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||| ||||||||||| || || ||||||||||| |||||| ||||||||||| ||||||         || ||||||||||||| ||||| |||      
T  1550157 taattaatgtgttgcttgtataagtttaagtgtcatagttagattgttgcttatttggtaagtaaga-----gt-cctaggtaatgatatctatggttct 1550250  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    |||||||| |||||  ||| || ||||||||||| ||||||||||||||||    
T  1550251 taggtaatgatgactagtg-tttagagtagatttagtgcagattttatgtt 1550300  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 7231108 - 7230963
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    |||||| | ||||||||||||| ||   |||||||||||||||| | ||||||||||||||||         |||| ||||||||||||||||| ||| |    
T  7231108 taattagattgttgcttgtttaagtt--agtgtcataattagattgctgcttatttagtaagtaaagta---gtccgtaggtaatgatgtctatggttcc 7231014  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgttc 235  Q
    |||||||| |||||  ||| || |||| |||||| |||||||||||||||||    
T  7231013 taggtaatgatgactagtg-tttagagcagatttagtgcagattttatgttc 7230963  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 22804610 - 22804755
Alignment:
Q  84 taattaaagtgttgcttgtttatgtataagtgtcataattagatagttgcttatttagtaagtnnnnnnncggtccctaggtaatgatgtctattgttgc 183  Q
    ||||||| | |||||||||||| || |||||| ||||||||||| | ||||||||| ||||||         |||| ||||||||||||||||| |||      
T  22804610 taattaatgcgttgcttgtttaagtttaagtgccataattagattgctgcttatttggtaagtaaaaga---gtcc-taggtaatgatgtctatggttct 22804705  T
Q  184 taggtaataatgaccggtgcttaagagtagatttcgtgcagattttatgtt 234  Q
    |||||||| |||||  ||| || |||||||||||  |||||||||||||||    
T  22804706 taggtaatgatgactagtg-tttagagtagatttaatgcagattttatgtt 22804755  T

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