View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17202_high_32 (Length: 277)
Name: NF17202_high_32
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_high_32 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7971756 - 7971495
Alignment:
| Q |
1 |
ccggaggtgcatcattgcggaagttccacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactt |
100 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7971756 |
ccggaggtgcatcattgcaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattt |
7971657 |
T |
|
| Q |
101 |
tgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgacatctttttattctctata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7971656 |
tgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcgacatctttttattctctata |
7971557 |
T |
|
| Q |
201 |
ttactttttaggctcaaatttgtattctggatttcattttattttcatcactctttataagt |
262 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7971556 |
ttactttttaggctcaaatttgtattttggatttcattttattttcatcactctttataagt |
7971495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8041932 - 8042164
Alignment:
| Q |
1 |
ccggaggtgcatcattgcggaagttccacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactt |
100 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8041932 |
ccggaggtgcatcattgcaaaaatttcacaatacagtctgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattt |
8042031 |
T |
|
| Q |
101 |
tgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgacatctttttattctctata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8042032 |
tgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgtcatgtccatgaggtatatcgacatctttttattctctata |
8042131 |
T |
|
| Q |
201 |
ttactttttaggctcaaatttgtattctggatt |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
8042132 |
ttactttttaggctcaaatttgtattttggatt |
8042164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8032053 - 8032284
Alignment:
| Q |
1 |
ccggaggtgcatcattgcggaagttccacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||| || |
|
|
| T |
8032053 |
ccggaggtgcatcattgcggaagttccacaatacagtgtgttcaagttgcaaaaatatcaaattgacctatttcattatgatctttgcctctgctcaatt |
8032152 |
T |
|
| Q |
101 |
tgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgacatctttttattctctata |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8032153 |
tgtattgtgtcatctaccaaacttgaactccatttccggtgtatccttggttgcagcagtcatgtccatttggtatatcgacatctttctattctctata |
8032252 |
T |
|
| Q |
201 |
ttactttttaggctcaaatttgtattctggatt |
233 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| |
|
|
| T |
8032253 |
ttac-ttttaggctcaaatatgtattttggatt |
8032284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 3279 - 3047
Alignment:
| Q |
1 |
ccggaggtgcatcattgcggaagttccacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactt |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| || |
|
|
| T |
3279 |
ccggaggtgcatcactgcgaaagttccacaatacagtgtgtccaagttgcaaaaatatcaaattgacatatttcattatgatctttgcctctgctcaatt |
3180 |
T |
|
| Q |
101 |
tgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtccatgaggtatatcgacatctttttattctctata |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| || ||| | | ||||||||| |
|
|
| T |
3179 |
tgtattgtgtcatctaccaaacttgaactccatttctggtgtatctttggtggcagcagtcatgtccatttggtatatctacttctatctgttctctata |
3080 |
T |
|
| Q |
201 |
ttactttttaggctcaaatttgtattctggatt |
233 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||| |
|
|
| T |
3079 |
gtactttttagactcaaatatgtattttggatt |
3047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 41382155 - 41381989
Alignment:
| Q |
1 |
ccggaggtgcatcattgcggaagttccacaatacagtgtgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactt |
100 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41382155 |
ccggaggtgcatcattgcaaaaatttcacaatacagtttgtccaagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatt |
41382056 |
T |
|
| Q |
101 |
tgtattgtctcatctaccaaacttgaactccatttccggtgtatctttggtggcagccgttatgtcc |
167 |
Q |
| |
|
|||||||| ||||||||| ||| | |||||| |||| |||||||||| || ||||| ||||||||| |
|
|
| T |
41382055 |
tgtattgtgtcatctacccaacctcaactccctttctagtgtatcttttgttgcagcagttatgtcc |
41381989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 14198675 - 14198574
Alignment:
| Q |
47 |
ttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcactttgtattgtctcatctaccaaacttgaactccatttccggtgtatct |
146 |
Q |
| |
|
||||||| ||||||||||| | ||| || ||||| |||||||||| ||||||||| |||||||| || || ||||||||||| ||||| ||||| ||| |
|
|
| T |
14198675 |
ttgcaaaaaaatcaaattgacttattttataatgatttttgcctctgttcactttgtcttgtctcacctccctaacttgaactctatttctggtgtctct |
14198576 |
T |
|
| Q |
147 |
tt |
148 |
Q |
| |
|
|| |
|
|
| T |
14198575 |
tt |
14198574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University