View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_high_33 (Length: 263)
Name: NF17202_high_33
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_high_33 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 95727 - 95965
Alignment:
| Q |
1 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95727 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
95826 |
T |
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| Q |
101 |
tattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95827 |
tattcaggtaaccctccttttcagggcatatatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
95926 |
T |
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| Q |
201 |
tgttgacaactggatggagtccattactcagtgacaaga |
239 |
Q |
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| T |
95927 |
tattgacaactggatggagtccatttgtcagtgacaaga |
95965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 87711 - 87949
Alignment:
| Q |
1 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
87711 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggac |
87810 |
T |
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| Q |
101 |
tattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
200 |
Q |
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| T |
87811 |
tattcagctaaccctcctcttcaggatatttttcccaaggatgttcatggcgaaaagtggcatttcaggcacgtttataggggcacgccgaagaggcatt |
87910 |
T |
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| Q |
201 |
tgttgacaactggatggagtccattactcagtgacaaga |
239 |
Q |
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| T |
87911 |
tgttgacaactggatggagtccttttgtcagcgacaaga |
87949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40870555 - 40870317
Alignment:
| Q |
1 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870555 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
40870456 |
T |
|
| Q |
101 |
tattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
200 |
Q |
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| T |
40870455 |
tattcaggtaaccctccttttcagggcatatatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
40870356 |
T |
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| Q |
201 |
tgttgacaactggatggagtccattactcagtgacaaga |
239 |
Q |
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| T |
40870355 |
tattgacaactggatggagtccatttgtcagtgacaaga |
40870317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40878572 - 40878334
Alignment:
| Q |
1 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
40878572 |
tcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggac |
40878473 |
T |
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| Q |
101 |
tattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacgccgaagaggcatt |
200 |
Q |
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| T |
40878472 |
tattcagctaaccctcctcttcaggatatttttcccaaggatgttcatggcgaaaagtggcatttcaggcacgtttataggggcacgccgaagaggcatt |
40878373 |
T |
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| Q |
201 |
tgttgacaactggatggagtccattactcagtgacaaga |
239 |
Q |
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|||||||||||||||||||||| || |||| ||||||| |
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| T |
40878372 |
tgttgacaactggatggagtccttttgtcagcgacaaga |
40878334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
4 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcg |
93 |
Q |
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||||||||| || || |||||||| |||||||||||||||||||| || || ||| ||||||||| ||||| |||| |||||||||||| |
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| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
20 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatgga |
99 |
Q |
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||||| ||||||||||| ||||||||||| || |||||| |||||| |||||||| || | |||||| |||||| |||| |
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| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 42730140 - 42730210
Alignment:
| Q |
5 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgc |
75 |
Q |
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| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgc |
42730210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
4 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
58 |
Q |
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||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
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| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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