View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_high_39 (Length: 243)
Name: NF17202_high_39
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_high_39 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 51 - 243
Target Start/End: Original strand, 6002343 - 6002545
Alignment:
| Q |
51 |
tcgtatacaagtttttacatgccattt----------ggtgtttctccataatcggatccttggtagcgcatgcatctccaatattttttcctttctatt |
140 |
Q |
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| T |
6002343 |
tcgtatacaagtttttacatgccatttttcaccaaatggtctttctccataatcggatccttggtagcgcatgcatctccaatattttttcctttcaatt |
6002442 |
T |
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| Q |
141 |
gtgcaaattttctggggacaaaaatagagttttgttttggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgca |
240 |
Q |
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| T |
6002443 |
gtgcaaattttctagggacaaaaatagagttttgttttggaaaaagctatttacagcgagaagttttctcgcgacaacaccacgaggcgtactgcatgca |
6002542 |
T |
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| Q |
241 |
agc |
243 |
Q |
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||| |
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| T |
6002543 |
agc |
6002545 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 32188249 - 32188313
Alignment:
| Q |
179 |
ggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagc |
243 |
Q |
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| T |
32188249 |
ggaaaaaactatttacagcgagaagttttctcgcgacaacaccacgacgcatactgcatgcaagc |
32188313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 27645868 - 27645804
Alignment:
| Q |
179 |
ggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagc |
243 |
Q |
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| T |
27645868 |
ggaaaaagctatgtatagcgaaaagttttctcgcgacaacaccatgacgtgtactgtattcaagc |
27645804 |
T |
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