View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17202_high_40 (Length: 242)

Name: NF17202_high_40
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17202_high_40
NF17202_high_40
[»] chr2 (4 HSPs)
chr2 (1-227)||(26666205-26666431)
chr2 (64-227)||(26661966-26662130)
chr2 (121-189)||(26662301-26662369)
chr2 (57-122)||(26665146-26665211)
[»] chr1 (3 HSPs)
chr1 (121-196)||(46886067-46886142)
chr1 (121-189)||(22902560-22902628)
chr1 (57-122)||(21532586-21532651)
[»] chr6 (1 HSPs)
chr6 (128-189)||(19702539-19702600)
[»] scaffold0697 (1 HSPs)
scaffold0697 (57-122)||(3544-3609)
[»] chr8 (2 HSPs)
chr8 (70-122)||(10641345-10641397)
chr8 (70-122)||(32714210-32714262)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 26666431 - 26666205
Alignment:
Q  1 tatattttcaataccaaaaacttaaatgtgacagaggtaaacaacaccaacatcagactagtgacacaaccaatagagtaaatgaattcaaagtataatt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26666431 tatattttcaataccaaaaacttaaatgtgacagatgtaaacaacaccaacatcagactagtgacacaaccaatagagtaaatgaattcaaagtataatt 26666332  T
Q  101 gatgtcattacacaactaataatatatagtgattctaaatttgacaaatctcactttcttagataatatgtcacacttggtaaaatcatctatggataat 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  26666331 gatgtcattacacaactaataatatatagtgattccaaatttgacaaatctcactttcttagataatatgtcacacttgggaacatcatctatggataat 26666232  T
Q  201 attaagcagtataaaagttgaaaaaag 227  Q
    |||||||||||||||||||||||||||    
T  26666231 attaagcagtataaaagttgaaaaaag 26666205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 26662130 - 26661966
Alignment:
Q  64 acacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataa-tatatagtgattctaaatttgacaaatctcactttcttag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  26662130 acacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaatatataatgattccaaatttgacaaatctcactttcttag 26662031  T
Q  163 ataatatgtcacacttggtaaaatcatctatggataatattaagcagtataaaagttgaaaaaag 227  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||    
T  26662030 ataatatgtcacatttgggaacatcatctatggataatattaagcagtataaaagttgaaaaaag 26661966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 26662369 - 26662301
Alignment:
Q  121 aatatatagtgattctaaatttgacaaatctcactttcttagataatatgtcacacttggtaaaatcat 189  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||    
T  26662369 aatatatagtgattccaaatttgacaaatctcactttcttagataatatttcacacttggaaatatcat 26662301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 26665211 - 26665146
Alignment:
Q  57 actagtgacacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataa 122  Q
    |||||| ||| | |||||||||||||| ||||  ||||||||| || || ||||||||||||||||    
T  26665211 actagtaacatatccaatagagtaaataaattttaagtataatcgaagtgattacacaactaataa 26665146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 46886067 - 46886142
Alignment:
Q  121 aatatatagtgattctaaatttgacaaatctcactttcttagataatatgtcacacttggtaaaatcatctatgga 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| || ||||| ||||||    
T  46886067 aatatatagtgattctaaatttgacaaatctcactttcttagataaaattttacacttgggaatatcatatatgga 46886142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 22902628 - 22902560
Alignment:
Q  121 aatatatagtgattctaaatttgacaaatctcactttcttagataatatgtcacacttggtaaaatcat 189  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||    
T  22902628 aatacatagtgattccaaatttgacaaatctcactttcttagataatatttcacacttgggaatatcat 22902560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 21532586 - 21532651
Alignment:
Q  57 actagtgacacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataa 122  Q
    |||||| ||| | |||||||||||||| |||| |||||||||| || || ||||||||||||||||    
T  21532586 actagtaacatatccaatagagtaaataaatttaaagtataatcgaagtgattacacaactaataa 21532651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 19702600 - 19702539
Alignment:
Q  128 agtgattctaaatttgacaaatctcactttcttagataatatgtcacacttggtaaaatcat 189  Q
    ||||||| |||||||||||||| ||||||||||||||||||| |||||||||| || |||||    
T  19702600 agtgattttaaatttgacaaatttcactttcttagataatatttcacacttgggaatatcat 19702539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 3544 - 3609
Alignment:
Q  57 actagtgacacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataa 122  Q
    |||||| ||| | |||||||||||||| |||| |||||||||| || || ||||||||||||||||    
T  3544 actagtaacatatccaatagagtaaataaatttaaagtataatcgaagtgattacacaactaataa 3609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 10641397 - 10641345
Alignment:
Q  70 ccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataa 122  Q
    |||||||||||||| |||| |||||||||| || || |||| |||||||||||    
T  10641397 ccaatagagtaaataaatttaaagtataatcgaagtgattatacaactaataa 10641345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 32714210 - 32714262
Alignment:
Q  70 ccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataa 122  Q
    |||||||||||||| |||| |||||||||| || || |||| |||||||||||    
T  32714210 ccaatagagtaaataaatttaaagtataatcgaagtgattatacaactaataa 32714262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University