View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_high_9 (Length: 528)
Name: NF17202_high_9
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_high_9 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Complemental strand, 1326646 - 1326148
Alignment:
| Q |
13 |
agatgaacttaggaacaagcttttcaggatattggtttggaccataaacattattgcctctagaggttataattggaagatcataggatctatgataagc |
112 |
Q |
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| T |
1326646 |
agatgaacttaggaacaagcttttcaggatattggtttggaccataaacattattgcctctagaggttataattggaagatcataggatctatgataagc |
1326547 |
T |
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| Q |
113 |
cataaccaacatttcagcacctgcttttgttgcagaataaggatttgttggtaaaagctgagatgtttcatggtttccgatattggcatctaaatcggtt |
212 |
Q |
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| T |
1326546 |
cataaccaacatttcagcacctgcttttgttgcagaataaggatttgttggtaaaagctgagatgtttcatggtttccgatattggcatctaaatcggtt |
1326447 |
T |
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| Q |
213 |
tcaccataaacttcatcagtactaacatgaatgaaccttttaacacaatttgtggccctgcatgcttcaagaagaacatgtgttccatatatgttattgt |
312 |
Q |
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| T |
1326446 |
tcaccataaacttcatcagtactaacatgaatgaaccttttaacacaatttgtggccctgcatgcttcaagaagaacatgtgttccatatatgttattgt |
1326347 |
T |
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| Q |
313 |
aggtgaattccatagagtttccaaatgagttatcaacatgagtttgtgcagcaaaatgcatgattgtgtctatttcctcttctatcaatacatgattcac |
412 |
Q |
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| T |
1326346 |
aggtgaattccatagagtttccaaatgagttatcaacatgagtttgtgcagcaaaatgcatgattgtgtctatttcctcttctatcaatacatgattcac |
1326247 |
T |
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| Q |
413 |
gatatcaactgaagctatatcacccttgatgaatttgaattttggtgatgaagtgcatgattgtaaattcttgaaagttgagcaataatctagtttatc |
511 |
Q |
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| T |
1326246 |
gatatcaactgaagctatatcacccttgatgaatttgaattttggtgatgaagtgcatgattgtaaattcttgaaagttgagcaataatctagtttatc |
1326148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 20272 - 20143
Alignment:
| Q |
122 |
catttcagcacctgcttttgttgcagaataaggatttgttggtaaaagctgagatgtttcatggtttccgatattggcatctaaatcggtttcaccataa |
221 |
Q |
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| T |
20272 |
catttccgctcctgcttttgttgcagagtacgggtttgtgggaagaagttgagaagcctcatggtttccaacaacagcatcttcatcggtctccccatag |
20173 |
T |
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| Q |
222 |
acttcatcagtactaacatgaatgaacctt |
251 |
Q |
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| T |
20172 |
acctcatcggtactgacatgaatgaacctt |
20143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 17798300 - 17798252
Alignment:
| Q |
142 |
ttgcagaataaggatttgttggtaaaagctgagatgtttcatggtttcc |
190 |
Q |
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| T |
17798300 |
ttgcagaataagggtttgtttctaaaagctgagaggcttcatggtttcc |
17798252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 19106740 - 19106692
Alignment:
| Q |
142 |
ttgcagaataaggatttgttggtaaaagctgagatgtttcatggtttcc |
190 |
Q |
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| T |
19106740 |
ttgcagaataagggtttgtttctaaaagctgagaggcttcatggtttcc |
19106692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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