View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_1 (Length: 1702)
Name: NF17202_low_1
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 1228; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1228; E-Value: 0
Query Start/End: Original strand, 352 - 1685
Target Start/End: Complemental strand, 48800051 - 48798702
Alignment:
| Q |
352 |
tcccggaagccaccacgaaccaaaccgcaccaccgtgagatgtgctgctaaacctgtcaaaacgccaccagcgacggcggcaccaccacccaccccatca |
451 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48800051 |
tcccggaagccaccacgaaccaaaccgctccaccgtgagatgtgctgctaaacctgtcaaaacgccaccagcgacggcggcaccaccacccaccccagca |
48799952 |
T |
|
| Q |
452 |
agccggaagaacagatccgagaagacacaaccaccaaaaccaatgaacagatccgaaaagacacaccggatctgacgtcggcaagaaagttgatctatag |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48799951 |
agccggaagaacagatccgagaagacacaaccaccaaaaccaatgaacagatccgaaaagacacaccggatctgacgtcggcaagaaagttgatctataa |
48799852 |
T |
|
| Q |
552 |
agcaaccgccgggaaaggatgaaggacgttggtggagcagcaggagaaacacgtcgccggagctgaggtggtgcggaggccgcgcctcatcgcaccaccg |
651 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48799851 |
agcaaccgccggaaaaggatgaaggacgtcggtggagcagcaggagaaacacgtcgccggagctgaggtggtgtggaggccgcgcctcatcgcaccaccg |
48799752 |
T |
|
| Q |
652 |
tcatatggtctacatcttgagaaagtgttgttggatttgaaggagaaggagccgcgatctgttttagagagagggcacaggttttagtttagagagagaa |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
48799751 |
tcatatggtctacatcttgagaaagtgttgttggatttgaaggagaaggaaccgcgatctgttttagagagagggcacaggttttagtttagagagcgaa |
48799652 |
T |
|
| Q |
752 |
aggttctttgattgcatatcttataagtatttacacgtatcttgcaaaaaataaacattgacttggattcatccaattaaggcttccaaaaaatttaaca |
851 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
48799651 |
aggttctttgattgcatatcttataagtatttacatgtatcttgcaaaaaataaacattgacttggattcatccaattaaggcttccaaaaattttaaca |
48799552 |
T |
|
| Q |
852 |
tgattaatgatgccaattcattctcttcaccaagaataatattacaagaaaattgtgataaaatgttgcttgaagaaatgaaactccatttgaaactaca |
951 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
48799551 |
tgattaatgatgcca----attctcttcaccaagaataatattacaagaaaattgtgataaaatgttgcttgaaaaaatgaaactccatttgaaactaca |
48799456 |
T |
|
| Q |
952 |
gaatttacatcaaacacaaccagcctaatttaatcagttctctgaggctgactggaagatgaaaactgctgtcaagacacccaccagtcctgttacggcc |
1051 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48799455 |
gaatttacatcaaacacaaccagcctaatttaatcagttctctgaggctgactggaagatgaaaactgctgtcaagacacccaccagtcctgttacggcc |
48799356 |
T |
|
| Q |
1052 |
aaggcaactgtaggcagtggacttgtgagtccaaagttctacaaaatcaaagtacaagaatattgttgttattcttttgcaattct-------------- |
1137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48799355 |
aaggcaactgtaggcagtggacttgtgagtccaaagttctacaaaatcaaagtacaagaatattgttgttattcttttgcaattctgcttataacaacta |
48799256 |
T |
|
| Q |
1138 |
------ctgagtgataagagaggttaagatgagtaaggagtatcaaagtcaaaacataataaagttcgttacggtttcagcgcgttgaaacttgcactca |
1231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48799255 |
cctaacctgagtgataagagaggttaagatgagtaaggagtatcaaagtcaaaacataataaagttcgttacggtttcagcgcgttgaaacttgcactca |
48799156 |
T |
|
| Q |
1232 |
cttggaagtttctaatttacttttttagatgcatcatagattcagaaagttatatgaacctatatatcactacaccaactcaatagcttaaaagatcatg |
1331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48799155 |
cttggaagtttctaatttacttttttagatgcatcatagattcagaaagttatatgaacctatatatcactacaccaactcaatagcttaaaagatcatg |
48799056 |
T |
|
| Q |
1332 |
aacagacacatagcttaattttacaactagataccatacacactataaagtaaaggagaaaggaagattaccatattgcagctaaaatatcaaagcaaac |
1431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799055 |
aacagacacatagcttaattttacaactagataccatacacactataaagtaaaggagaaaggaagattaccatattgcagctaaaatatcaaagcaaac |
48798956 |
T |
|
| Q |
1432 |
atttgagttttgacaaataggggtgatagaaagaaaaacatataagccaattatcaatcatttgatggaaattataatttgtttcatgacttaaaagatt |
1531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48798955 |
atttgagttttgacaaataggggtgatagaaagaaaaacatataagccaattatcaatcatttgatggaaattataatttgtttcatgacttaaaagatt |
48798856 |
T |
|
| Q |
1532 |
gaagacaagtgattgcagtctaagtcatgcataaagtaactcaaagtttacgttatggtgtgcaaatatacctctaggagtccttttcctgaagtaattt |
1631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48798855 |
gaagacaagtgattgcagtctaagtcatgcataaagtaactcaaagtttacgttatggtgtgcaaatatacctctaggagtccttttcctgaagtaattt |
48798756 |
T |
|
| Q |
1632 |
caacagtaatggctactgcaaaaccaaccatggctacccggccaagccatacat |
1685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798755 |
caacagtaatggctactgcaaaaccaaccatggctacccggccaagccatacat |
48798702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-46
Query Start/End: Original strand, 116 - 278
Target Start/End: Complemental strand, 4304932 - 4304769
Alignment:
| Q |
116 |
gtggagtgaaacggtatataaaggacccgcggagatgctgccggaaacaaatggccgccggaatcctaaagggcaacgaatctgaaaac-gagctaaagg |
214 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||| ||| |||||||||||| ||||| |||||||||| |
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|
| T |
4304932 |
gtggagtgaaacggtatataaatgacgcgcggagatgctgtcggaaacaaatggtcgccggaatccaaaaaggcaacgaatctaaaaacggagctaaagg |
4304833 |
T |
|
| Q |
215 |
aaggaagcttaaccaccgcgaaactgaacaacaaccgccgcaaaacggccaccaagcagatccg |
278 |
Q |
| |
|
||||| ||||||||||||| | |||||||||| |||||| ||||||||||| ||||| ||||| |
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|
| T |
4304832 |
aaggaggcttaaccaccgcagatctgaacaacagccgccgtaaaacggccactaagcaaatccg |
4304769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 116 - 281
Target Start/End: Complemental strand, 7702806 - 7702641
Alignment:
| Q |
116 |
gtggagtgaaacggtatataaaggacccgcggagatgctgccggaaacaaatggccgccggaatcctaaagggcaacgaatctgaaaac-gagctaaagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| | | ||||||| ||| |||||||||||||||||| || ||||||| |
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|
| T |
7702806 |
gtggagtgaaacggtatataaaggacgcgcagagatgctgtcggaaacaaatggtctctggaatccaaaaaggcaacgaatctgaaaacggaactaaagg |
7702707 |
T |
|
| Q |
215 |
aaggaagcttaaccaccgcgaaactgaacaacaaccgccgcaaaacggccaccaagcagatccggat |
281 |
Q |
| |
|
|||| || ||||||||||| | |||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
7702706 |
aagg-aggttaaccaccgcagatctgaacaacagccgccgcaaaacggccaccaagcaaatccggat |
7702641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 606 - 667
Target Start/End: Complemental strand, 38148746 - 38148684
Alignment:
| Q |
606 |
cgccggagctgaggtggtgcggaggccgcgcctcatcgcaccaccgtcatatgg-tctacatc |
667 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||||||| ||| ||| |||||||| |
|
|
| T |
38148746 |
cgccggaggtgaggtgatgcggaggccgcacctcatcgcaccaccgccatttggatctacatc |
38148684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 623 - 671
Target Start/End: Complemental strand, 13994549 - 13994500
Alignment:
| Q |
623 |
tgcggaggccgcgcctcatcgcaccaccgtcatatgg-tctacatcttga |
671 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || |||||||||||| |
|
|
| T |
13994549 |
tgcggaggccgtgcctcatcgcaccaccgtcataaggatctacatcttga |
13994500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 615 - 667
Target Start/End: Original strand, 36594250 - 36594303
Alignment:
| Q |
615 |
tgaggtggtgcggaggccgcgcctcatcgcaccaccgtcatatgg-tctacatc |
667 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
36594250 |
tgaggtgttgcggaggccgcgcctcatcgcaccaccatcatttggatctacatc |
36594303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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