View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17202_low_11 (Length: 503)
Name: NF17202_low_11
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 33499721 - 33500166
Alignment:
| Q |
15 |
caggatctccttcttattccttctcctttgtttatgttggtcttgacacgtcaaacctcaccttgcatacttcccaaaccgaagtccccagttgggtgat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499721 |
caggatctccttcttattccttctcctttgtttatgttggtcttgacacgtcaaacctcaccttgcatacttcccaaaccgaagtccccagttgggtgat |
33499820 |
T |
|
| Q |
115 |
ttcttgagtgtttcctacatcctgacgctatttacaaacttcccaaaaataacaacttcaaaacatttttatcgtccatcgattgatgatttggtcttgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499821 |
ttcttgagtgtttcctacatcctgacgctatttacaaacttcccaaaaataacaacttcaaaacatttttatcgtccatcgattgatgatttggtcttgt |
33499920 |
T |
|
| Q |
215 |
tgactttgatggaacatctgctcaggctaaagactgaagacttgcgcacannnnnnngcttactgaattatgttatcattgtgtttggttgtgagtgata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499921 |
tgactttgatggaacatctgctcaggctaaagactgaagacttgcgcacatttttttgcttactgaattatgttatcattgtgtttggttgtgagtgata |
33500020 |
T |
|
| Q |
315 |
attccaagcttaagcattcttttaataataaagaaattctttaatttgttggatatttcattgcaaatcacttggctaagttagctaatagacaacaatg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33500021 |
attccaagcttaagcattcttttaataataaagaaattctttaatttgttggatatttcattgcaaatcacttggctaagttagctaatagacaacaatg |
33500120 |
T |
|
| Q |
415 |
atatttggagatcctctaactccccaacacacttcaacatcttcaa |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33500121 |
atatttggagatcctctaactccccaacacacttcaacatcttcaa |
33500166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University