View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_12 (Length: 453)
Name: NF17202_low_12
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 21 - 442
Target Start/End: Complemental strand, 22362625 - 22362204
Alignment:
| Q |
21 |
ttcaccaagaaacaagatggtccaattgtgttcattgatgatgattctcattctcctagtctatggaccaaattccttgaactgaagaagaataacaaag |
120 |
Q |
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| T |
22362625 |
ttcaccaagaaacaagatggtccaattgtgttcattgatgatgattctcattctcctagtctatggaccaaattccttgaactgaagaagaatgacaaag |
22362526 |
T |
|
| Q |
121 |
tgcaacaccttaagacattggtacaaagacaagaagaagaggaagaggagaagcaaacaagttggtcatggagaaagctcatgaaaaatgtattaggaaa |
220 |
Q |
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| T |
22362525 |
tgcaacaccttaagacattggtacaaagacaagaagaagaggaagaggagaagcaaacaagttggtcatggaggaagctcatgaaaaatgtattaggaaa |
22362426 |
T |
|
| Q |
221 |
agagaagaagaagatagagaataaagacagagctgattcccctgactcttacaatctttatgatagaaaacctgatttccgaaatgcatatggttggagc |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362425 |
agagaagaagaagatagagaataaagacagagctgattcccctgactcttacaatctctatgatagaaaacctgatttccgaaatgcatatggttggagc |
22362326 |
T |
|
| Q |
321 |
agtgcattggatggtggcgattattctccgctcaaaatacctgatatcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttaca |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362325 |
agtgcattggatggtggcgattattctccgctcaaaatacctgatatcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttaca |
22362226 |
T |
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| Q |
421 |
tattttaaccatgatcttgctg |
442 |
Q |
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||||||||||||||| |||||| |
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| T |
22362225 |
tattttaaccatgatattgctg |
22362204 |
T |
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