View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_13 (Length: 444)
Name: NF17202_low_13
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 4 - 444
Target Start/End: Original strand, 25049195 - 25049637
Alignment:
| Q |
4 |
acagaggaaaaggtgaatgaagttatataataagagagtcacagatacatcaaacagattccaaaaccggttgaaagccacataacacaa--ttgtgagt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25049195 |
acagaggaaaaggtgaatgaagttatataataagagagtcacagatacatcaaacagattccaaaaccggttgaaagccacataacacaaaattgtgagt |
25049294 |
T |
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| Q |
102 |
aaaagacaaaggaagaaagaagnnnnnnnctcataacatgagagccggtttcacagacggccagaagcaaccattcctaagccggctatatgtaatgtaa |
201 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25049295 |
aaaagacaaaggaagaaagaagaaaaaaactcataacatgagagccggtttcacagacggccagaagcaaccattcctaagccggctatatgtaatgtaa |
25049394 |
T |
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| Q |
202 |
tgaaattgccagcacaatcttttctaacctcattctttatccatatccctttaaattaccctcttcatccattccatgacgattaagacgtacgtatagc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25049395 |
tgaaattgccagcacaatcttttctaacctcattctttatccatatccctttaaattaccctcttcatccattccatgacgattaagacgtacgtatagc |
25049494 |
T |
|
| Q |
302 |
aatattcatcttttgttttccatggcgaaactatcgcaacagcaaactcagaaaaacaatgcgagaaataacaataaccttaaagcaactaattccgtcg |
401 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
25049495 |
aatattcatcttttgttttccatggcgaaactatcacaacagcaaactcagaaaaacaatgcaagaaataacaataaccttaaagcaactaataccgtcg |
25049594 |
T |
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| Q |
402 |
ttgtcgacaacaaagtgaaaagaacaaggagaagtgtcccaag |
444 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25049595 |
ttgttgacaacaaagtgaaaagaacaaggagaagtgtcccaag |
25049637 |
T |
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