View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17202_low_14 (Length: 429)

Name: NF17202_low_14
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17202_low_14
NF17202_low_14
[»] chr3 (21 HSPs)
chr3 (101-423)||(10264589-10264911)
chr3 (1-77)||(10264510-10264586)
chr3 (32-126)||(10584508-10584605)
chr3 (59-126)||(10360125-10360195)
chr3 (59-122)||(9981062-9981128)
chr3 (215-263)||(10130686-10130734)
chr3 (215-263)||(10372281-10372329)
chr3 (34-126)||(11772569-11772661)
chr3 (37-123)||(10521560-10521646)
chr3 (38-127)||(9842279-9842368)
chr3 (34-121)||(11778628-11778715)
chr3 (213-263)||(9981184-9981234)
chr3 (37-123)||(10667804-10667890)
chr3 (27-122)||(10532547-10532642)
chr3 (213-263)||(10360023-10360073)
chr3 (119-181)||(10430098-10430160)
chr3 (48-92)||(10035642-10035686)
chr3 (48-87)||(10130567-10130606)
chr3 (128-198)||(11772679-11772752)
chr3 (44-86)||(10430198-10430240)
chr3 (46-122)||(10681377-10681453)
[»] scaffold0083 (2 HSPs)
scaffold0083 (59-122)||(54009-54075)
scaffold0083 (213-263)||(53903-53953)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 101 - 423
Target Start/End: Original strand, 10264589 - 10264911
Alignment:
Q  101 gtttgtattttattatcatttgaatgtttcctaataacctgcatgatccgatcagacaaagtacaatgtagtaggatttgttatattcttaatttgtaac 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10264589 gtttgtattttattatcatttgaatgtttcgtaataacctgcatgatccgatcagacaaagtacaatgtagtaggatttgtaatattcttaatttgtaac 10264688  T
Q  201 nnnnnnnnncggacgtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccattctctgctaaatattcttgttggctggtttatttacc 300  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10264689 tttttttttcggacgtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccattctctgctaaatattcttgttggctggtttatttacc 10264788  T
Q  301 acnnnnnnnnnnnnnnnnnncgaccctttagtaacctttctgatcaacaatgcctcaaaaaatcctacaatatctgcttcccaattggtaagtatcttaa 400  Q
    ||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10264789 acaaaaaaaagaaaaaaaaacgaccctttagtaacctttctgatcaacaatgcctcaaaaaatcctacaatatctgcttcccaattggtaagtatcttaa 10264888  T
Q  401 gaagcttcataaccctttgcttc 423  Q
    |||||||||||||||||||||||    
T  10264889 gaagcttcataaccctttgcttc 10264911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10264510 - 10264586
Alignment:
Q  1 atgaattgaagaaaaatgcttagttgaacttatttgagaggacccaaatgcatggttgccattgattgccacaagat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10264510 atgaattgaagaaaaatgcttagttgaacttatttgagaggacccaaatgcatggttgccattgattgccacaagat 10264586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 10584508 - 10584605
Alignment:
Q  32 atttgagaggacccaaatgcatggttgccattgattgccacaagatttaatttactta---gctaataatgagtttgtattttattatcatttgaatg 126  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||    
T  10584508 atttgagacgagccaaatgcatggtttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgtattttattatcatttgaatg 10584605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 10360195 - 10360125
Alignment:
Q  59 ccattgattgccacaagatttaatttactta---gctaataatgagtttgtattttattatcatttgaatg 126  Q
    |||||||||||||||||||||||||||||||   ||||||| | |||||||||||||||||||||||||||    
T  10360195 ccattgattgccacaagatttaatttacttagctgctaatagtcagtttgtattttattatcatttgaatg 10360125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 9981062 - 9981128
Alignment:
Q  59 ccattgattgccacaagatttaatttactta---gctaataatgagtttgtattttattatcatttg 122  Q
    |||||||||||||||||||||||||||||||   ||||||| | |||||||||||||||||||||||    
T  9981062 ccattgattgccacaagatttaatttacttagctgctaatagtcagtttgtattttattatcatttg 9981128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 10130686 - 10130734
Alignment:
Q  215 gtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat 263  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10130686 gtgattcttaatttgtaactttaagtgaatgctcatatgataaaaccat 10130734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 10372329 - 10372281
Alignment:
Q  215 gtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat 263  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10372329 gtgattcttaatttgtaactttaagtgaatgctcatatgataaaaccat 10372281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 11772569 - 11772661
Alignment:
Q  34 ttgagaggacccaaatgcatggttgccattgattgccacaagatttaatttacttagctaataatgagtttgtattttattatcatttgaatg 126  Q
    ||||||||| ||||||  || ||||| |||||| |||||||||||  |||||||| ||||||| | |||||| ||||||||||||||||||||    
T  11772569 ttgagaggatccaaatagatagttgcaattgatagccacaagattgtatttacttggctaatattcagtttgcattttattatcatttgaatg 11772661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 10521560 - 10521646
Alignment:
Q  37 agaggacccaaatgcatggttgccattgattgccacaagatttaatttacttagctaataatgagtttgtattttattatcatttga 123  Q
    |||||| ||||||||||||||||||||||||||  ||||||| ||||| |||||||| || | | | |||||||| |||||||||||    
T  10521560 agaggagccaaatgcatggttgccattgattgcatcaagattgaatttgcttagctagtattaattatgtattttcttatcatttga 10521646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 9842279 - 9842368
Alignment:
Q  38 gaggacccaaatgcatggttgccattgattgccacaagatttaatttacttagctaataatgagtttgtattttattatcatttgaatgt 127  Q
    ||||| |||||||||||||| ||||||||||||||||||||  ||| ||||| |||||| | ||| | ||||| ||||| ||||||||||    
T  9842279 gaggagccaaatgcatggttaccattgattgccacaagattggattcacttacctaatattcagtctttatttcattataatttgaatgt 9842368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 11778715 - 11778628
Alignment:
Q  34 ttgagaggacccaaatgcatggttgccattgattgccacaagatttaatttacttagctaataatgagtttgtattttattatcattt 121  Q
    ||||||||| ||||||  || ||||| |||||| |||||||||||  |||||||| ||||||| | |||||| |||||||||||||||    
T  11778715 ttgagaggatccaaatagatagttgcaattgatagccacaagattgtatttacttggctaatattcagtttgcattttattatcattt 11778628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 9981184 - 9981234
Alignment:
Q  213 acgtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat 263  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  9981184 acgtgattcttaatttgtaattttaaatgaatgctcatatgataaaaccat 9981234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 10667804 - 10667890
Alignment:
Q  37 agaggacccaaatgcatggttgccattgattgccacaagatttaatttacttagctaataatgagtttgtattttattatcatttga 123  Q
    |||||| ||||||||||||||||||||||||||  |||||||  |||| |||||||| || | | | |||||||| |||||||||||    
T  10667804 agaggagccaaatgcatggttgccattgattgcatcaagattggatttgcttagctagtattaattatgtattttcttatcatttga 10667890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 10532547 - 10532642
Alignment:
Q  27 aacttatttgagaggacccaaatgcatggttgccattgattgccacaagatttaatttacttagctaataatgagtttgtattttattatcatttg 122  Q
    ||||| ||| ||||||  |||||||||||||||  |||||||||||||||||  ||||| ||| | |||  | |||||||||||| ||||||||||    
T  10532547 aacttgttttagaggattcaaatgcatggttgctgttgattgccacaagattggatttaattaaccaattttcagtttgtattttcttatcatttg 10532642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 10360073 - 10360023
Alignment:
Q  213 acgtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat 263  Q
    |||||||||||||||||||| |||||  |||||||| ||||||||||||||    
T  10360073 acgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccat 10360023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 10430160 - 10430098
Alignment:
Q  119 tttgaatgtttcctaataacctgcatgatccgatcagacaaagtacaatgtagtaggatttgt 181  Q
    |||| ||||||| ||||||||||||||||||| ||||||| | ||||||| |||||| |||||    
T  10430160 tttgtatgtttcataataacctgcatgatccggtcagacagattacaatgcagtagggtttgt 10430098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 10035642 - 10035686
Alignment:
Q  48 atgcatggttgccattgattgccacaagatttaatttacttagct 92  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||    
T  10035642 atgcatagttgccattcattgccacaagatttaatttactcagct 10035686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 10130567 - 10130606
Alignment:
Q  48 atgcatggttgccattgattgccacaagatttaatttact 87  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  10130567 atgcatagttgccattcattgccacaagatttaatttact 10130606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 11772679 - 11772752
Alignment:
Q  128 ttcctaataacctgc---atgatccgatcagacaaagtacaatgtagtaggatttgttatattcttaatttgta 198  Q
    |||||||||||||||   |||||||  | |||||||||| |||| | |||||||||| ||||||||||||||||    
T  11772679 ttcctaataacctgctgcatgatcccgttagacaaagtagaatgcattaggatttgtaatattcttaatttgta 11772752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 10430240 - 10430198
Alignment:
Q  44 ccaaatgcatggttgccattgattgccacaagatttaatttac 86  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||    
T  10430240 ccaaatgtatggttgtcattgattgccacaagattgaatttac 10430198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 10681377 - 10681453
Alignment:
Q  46 aaatgcatggttgccattgattgccacaagatttaatttacttagctaataatgagtttgtattttattatcatttg 122  Q
    ||||||||||||||  |||||||||||||||||  ||||| ||| | |||  | |||||||||||| | ||||||||    
T  10681377 aaatgcatggttgctgttgattgccacaagattggatttaattaaccaattttcagtttgtattttctgatcatttg 10681453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 54075 - 54009
Alignment:
Q  59 ccattgattgccacaagatttaatttactta---gctaataatgagtttgtattttattatcatttg 122  Q
    |||||||||||||||||||||||||||||||   ||||||| | |||||||||||||||||||||||    
T  54075 ccattgattgccacaagatttaatttacttagctgctaatagtcagtttgtattttattatcatttg 54009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 53953 - 53903
Alignment:
Q  213 acgtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat 263  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  53953 acgtgattcttaatttgtaattttaaatgaatgctcatatgataaaaccat 53903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University