View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_15 (Length: 428)
Name: NF17202_low_15
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 424
Target Start/End: Complemental strand, 52687016 - 52686607
Alignment:
| Q |
15 |
aattccttcataaaatttatcccaaaaatatatacaaatgactcttttgtcattaaccatatttttgatagataaatatgataagttgacaattaaattg |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52687016 |
aattccttcgtaaaatttatcccaaaaatatatacaaatgactcttttgtcattaaccatatttttgaaagataaatatgataagttgacaattaaattt |
52686917 |
T |
|
| Q |
115 |
ttgtccaacagtgtatatttatatggattaggcattatttgattttctcttttactcttattattaattataaatggtgtatttttctatgattgtcaaa |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52686916 |
ttgttcaacagtgtatatttatatggattaggcattatttgattttctctttaactcgtattattaattataaatggtgtatttttctatgattgtcaaa |
52686817 |
T |
|
| Q |
215 |
tacgttgttgagttttggatgttcaaataacattgttcttttttaaaatgttagagtggtattatatgaacatctaaacgttgacaacatatttaaaatc |
314 |
Q |
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| T |
52686816 |
tacgttgttgagttttggatgttcaaataacattattcttttttaaaatgttagagtggtattatataaacatctaaacattgacaacatatttaaaatc |
52686717 |
T |
|
| Q |
315 |
gtataaacatccatcttataactatcttttatatacaaactactctcttcatccctaattataaaataacttctaaannnnnnnnatcccttaatatgaa |
414 |
Q |
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| T |
52686716 |
gtataaacatccatcttataactatcttttatatacaaactactctcttcatccctaattataaaataacttctaaaatttttttatcccttaatataaa |
52686617 |
T |
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| Q |
415 |
acaaattttc |
424 |
Q |
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| T |
52686616 |
acaatttttc |
52686607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 50229858 - 50229787
Alignment:
| Q |
177 |
attaattataaatggtgtatttttcta-tgattgtcaaatacgttgttgagttttggatgttcaaataacatt |
248 |
Q |
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| T |
50229858 |
attagttataaattgtgtatttttatacttattatcaaata-gttgttgttttttggatgttcaaataacatt |
50229787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 4666851 - 4666785
Alignment:
| Q |
182 |
ttataaatggtgtatttttctatgattgtcaaatacgttgttgagttttggatgttcaaataacatt |
248 |
Q |
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| T |
4666851 |
ttataaatggtgtatttttatatggttgtcaaatacgttgtcaagttttggttgttcaaataacatt |
4666785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 17102564 - 17102496
Alignment:
| Q |
180 |
aattataaatggtgtatttttctatgattgtcaaatacgttgttgagttttggatgttcaaataacatt |
248 |
Q |
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|||||||||| |||||||||| ||| |||||||||| ||||| | |||| | ||||||||||||||| |
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| T |
17102564 |
aattataaattgtgtatttttatattcttgtcaaataagttgtcaaatttttgttgttcaaataacatt |
17102496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 28629177 - 28629217
Alignment:
| Q |
208 |
tgtcaaatacgttgttgagttttggatgttcaaataacatt |
248 |
Q |
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| T |
28629177 |
tgtcaaatacgttgttaagttttgattgttcaaataacatt |
28629217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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