View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_17 (Length: 420)
Name: NF17202_low_17
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 132 - 323
Target Start/End: Complemental strand, 10578101 - 10577911
Alignment:
| Q |
132 |
actaattaattcatatggaaagtaactcatgcgcatagagatgagttaacatttgtttagccctttattgttttgtttgttcccttctcttcctaatagc |
231 |
Q |
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| T |
10578101 |
actaattaattcatatagaaagtaactcatgcgcatagagatgagctaacatgtgtttagccctttattgttttgtttgttcccttctctttctaatagc |
10578002 |
T |
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| Q |
232 |
attaacctagattacataagaaatgagttaggcttacataactttt-atttatgtcttttttgaaatgtgttgacctagtttcgcttctcttt |
323 |
Q |
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| T |
10578001 |
attaacctagattacataagaaatgagttaggcttgcataacttttgatttatgtc-tttttgaaatgtgtt-acctaatttagcttctcttt |
10577911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10578239 - 10578173
Alignment:
| Q |
1 |
ataataaatatttgtcctatgnnnnnnnaataaaaaattcataaaaaattgtgataaatacttgtct |
67 |
Q |
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| T |
10578239 |
ataataaatatttgtcctatgattttttaataaaaaattcataaaaaattgtgataaatacttgtct |
10578173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 10576572 - 10576509
Alignment:
| Q |
346 |
ccttaatgaatttgggtaatgcatctagcattacnnnnnnnaggaaatatctagcatcgcctttg |
410 |
Q |
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| T |
10576572 |
ccttaatgaatttggctaatgcatctagcattactttttttaggaaatatct-gcatcgcctttg |
10576509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 333
Target Start/End: Original strand, 11278135 - 11278271
Alignment:
| Q |
202 |
ttttgtttgttcccttctcttcctaata----gcattaacctagattacataagaaatgagttaggcttacataactttta-tttatgtcttttttgaaa |
296 |
Q |
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| T |
11278135 |
ttttgtttgttcccttctcttcctaattaattgcattaacctagattacataagaaataaattagtcttgcataaatttaggtttatgtctttttgaaaa |
11278234 |
T |
|
| Q |
297 |
tgtgttgacctagtttcgcttctctttattcttattt |
333 |
Q |
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| T |
11278235 |
tgtgttgacctagtttcccttttcttttttcgtattt |
11278271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 12120834 - 12120893
Alignment:
| Q |
188 |
ttagccctttattgttttgtttgttcccttctcttcctaatagcattaacctagattaca |
247 |
Q |
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| T |
12120834 |
ttagctctttatttttttgtttgttccatttttttcctaatagcattaacctagattaca |
12120893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 17996818 - 17996696
Alignment:
| Q |
135 |
aattaattcatatggaaagtaactcatgcgcatagagatgagttaacatttgtttagccctttattgttttg------tttgttcccttctcttcctaat |
228 |
Q |
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|||||||||||| ||||| ||||| || ||||| || | || ||||||| ||||| ||||||||| |||| |||||||| || |||| ||||| |
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| T |
17996818 |
aattaattcataaagaaagaaactcgtgagcatataggttagctaacattagtttaaccctttattttttttattttttttgttcctttttctttctaat |
17996719 |
T |
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| Q |
229 |
agcattaacctagattacataag |
251 |
Q |
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| T |
17996718 |
agcattaacctagattacataag |
17996696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 49420106 - 49420070
Alignment:
| Q |
30 |
ataaaaaattcataaaaaattgtgataaatacttgtc |
66 |
Q |
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| T |
49420106 |
ataaaaacttcataaaaatttgtgataaatacttgtc |
49420070 |
T |
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