View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_19 (Length: 392)
Name: NF17202_low_19
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 42211801 - 42211435
Alignment:
| Q |
17 |
aattcctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccactgcctcttttcaacaacttgaaaaac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42211801 |
aattcctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaacttgaaaaac |
42211702 |
T |
|
| Q |
117 |
ctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactcaactcagttgcagattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211701 |
ctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactcaactcagttgcagattc |
42211602 |
T |
|
| Q |
217 |
ttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttgctaataatcagctaaa |
316 |
Q |
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| T |
42211601 |
ttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttgctaataatcagctaaa |
42211502 |
T |
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| Q |
317 |
tggaagcattcctcatggaatgaataagtttcaaaatctcatatccttctcttttgaacagaattat |
383 |
Q |
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| T |
42211501 |
tggaagcattcctcatggaatgaagaagtttcaaaatctcatatccttctcttttgaacagaattat |
42211435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 383
Target Start/End: Complemental strand, 42224013 - 42223651
Alignment:
| Q |
21 |
cctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccactgcctcttttcaacaacttgaaaaacctca |
120 |
Q |
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| T |
42224013 |
cctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaacttgaaaaacctca |
42223914 |
T |
|
| Q |
121 |
ctcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactcaactcagttgcagattcttat |
220 |
Q |
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|||||||| ||| |||| || |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
42223913 |
ctcatttgtatctcagtaagaataatctcacttccactacatcattgaattttcagttctttgattcccttcgaaactcaactcagttacaaattcttat |
42223814 |
T |
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| Q |
221 |
gatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttgctaataatcagctaaatgga |
320 |
Q |
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| T |
42223813 |
ggtcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttgctaataatcagctaaatgga |
42223714 |
T |
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| Q |
321 |
agcattcctcatggaatgaataagtttcaaaatctcatatccttctcttttgaacagaattat |
383 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223713 |
agcattcctcatggaatgaagaagtttcaaaatctcatatccttctcttttgaacagaattat |
42223651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 101 - 362
Target Start/End: Complemental strand, 42199146 - 42198885
Alignment:
| Q |
101 |
caacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
42199146 |
caacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattgaattttcagttctttgattcccttaaaaactca |
42199047 |
T |
|
| Q |
201 |
actcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttg |
300 |
Q |
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||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| | | |||||||||||||||| ||||||| |
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| T |
42199046 |
actcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttctgtgttg |
42198947 |
T |
|
| Q |
301 |
ctaataatcagctaaatggaagcattcctcatggaatgaataagtttcaaaatctcatatcc |
362 |
Q |
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|| |||||||||| | ||||||||||||||| |||||| | || ||||||||||||| |||| |
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| T |
42198946 |
ctcataatcagctgagtggaagcattcctcagggaatgcagaaatttcaaaatctcacatcc |
42198885 |
T |
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