View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_2 (Length: 890)
Name: NF17202_low_2
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 740; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 19 - 882
Target Start/End: Original strand, 45565237 - 45566099
Alignment:
| Q |
19 |
cttctagggaaggaggggaacattcataccattttgtaagtgctttaagaaaatggtcatgagagttccaaatacacgtaccaatactgaagcaatttta |
118 |
Q |
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| T |
45565237 |
cttctagggaaggaggggaacattcataccattttgtaagtgctttaagaaaatggccatgagagttccaaatacacgtaccaatactgaagcaatttta |
45565336 |
T |
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| Q |
119 |
attgccaaacaacatcgcgtcaacgttacattttacataaccgtctttcggtggctgccatctagaattctactgtactgtaccctgatgtttgc----- |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45565337 |
attgccaaacaacatcgcgtcaacgttgcattttacataaccgtctttgggtggctgccatctagaattctactgtactgtaccctgatgtttgccttgt |
45565436 |
T |
|
| Q |
214 |
------ttctttcggactgtttcccactgatataaagcttcaggtgcacgctggacagcacctgtggcagcacctgcgcctctgctaactgaatcccaca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45565437 |
gtttgcttctttcggactgtttcccactgatataaagcttcaggtgcacgctggacagc------------acctgcgcctctgctaactgaatcccaca |
45565524 |
T |
|
| Q |
308 |
gatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatggggacatccatttgaacatagaactcctctct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45565525 |
gatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatggggacatccatttgaacatggaactcctctct |
45565624 |
T |
|
| Q |
408 |
cttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgttagagaattcgcaaaccccacattctcatccattc |
507 |
Q |
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| T |
45565625 |
tttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgttacagaattcgcaaaccccacattctcatccattc |
45565724 |
T |
|
| Q |
508 |
gcccaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttc |
607 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45565725 |
accgaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttc |
45565824 |
T |
|
| Q |
608 |
aagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtgtcaccatccttaagccaaatcacctttgctattt |
707 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45565825 |
aagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtatcaccatccttaagccaaatcacctttgctattt |
45565924 |
T |
|
| Q |
708 |
gtttccaaaatgcttctgcttgtgccaataatcctcccattcaaatatgtacctccttagagcgcccaatttgggaagcttgcacgctgcccctaaatct |
807 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45565925 |
gtttccaaaatgcttctgcttgtgccaataatcctctcattcaaatatgtacctccttagagcgcgcaatttgggaagcttgcacgctgcccctaaatct |
45566024 |
T |
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| Q |
808 |
atctaactcatcccgacattcatcaatggaaacttgatacttactttggagctttcttcccggttcgttcatatc |
882 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
45566025 |
ctctaactcatcccgacattcatcaatggaaactcgatacttactttggagctttcttccccgttcgttcatatc |
45566099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 674 - 735
Target Start/End: Original strand, 8179388 - 8179449
Alignment:
| Q |
674 |
tcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaa |
735 |
Q |
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||||||||||| |||||||||||||| ||| |||| |||||||| |||||| |||||||||| |
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| T |
8179388 |
tcaccatccttcagccaaatcaccttagctctttgcttccaaaacgcttcttcttgtgccaa |
8179449 |
T |
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