View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_23 (Length: 350)
Name: NF17202_low_23
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 36576634 - 36576455
Alignment:
| Q |
15 |
tcaccatgatcatttgagttatcaatattagccatacgatgcatatgttccccataataataagattatgtaattatttggttttaattcttttggagaa |
114 |
Q |
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| T |
36576634 |
tcaccatgatcatttgagttatcaatattagccatacgatgcatatgttccccataataataagattatgtaattatttggttttaattcttttggagaa |
36576535 |
T |
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| Q |
115 |
gttttatatatgtatcgggccagtccaataattttaataaataaatgagagcaaaagcaaaattttaatatatgtagcctc |
195 |
Q |
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| T |
36576534 |
gttttatatatgtatcgggtcagtccaataatttttaaaaataaatgagagcaaaagcaaaa-tttaatatatgtagcctc |
36576455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 36576380 - 36576307
Alignment:
| Q |
266 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacatacaaatattttaatttcttaacaatggtttcat |
339 |
Q |
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| T |
36576380 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacataaaaatattttaatttctcaacaatggtttcat |
36576307 |
T |
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