View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_24 (Length: 348)
Name: NF17202_low_24
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_24 |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 47 - 341
Target Start/End: Complemental strand, 24510515 - 24510221
Alignment:
| Q |
47 |
tcaaacattcccatcatacacttcttagttgcttgaaatgaatgaaagagtgtgaaagcaatcaaatactccaactaaattattagtagattgacaaatt |
146 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24510515 |
tcaaacattcccatcatacacttcttagttacttgaaatgaatgaaagagtgtgaaagcaatcaaatgctccaactaaattattagtagattgacaaatt |
24510416 |
T |
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| Q |
147 |
gcctaactacttctcaaattcatatgtataaaaagtagcatgcatatatacattttgatttgtcattgtgatgatcgaaatgagttcaacaactaaataa |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24510415 |
gcctaactacttctcaaattcatatgtataaaaagtagcatgcatatatacatattgatttgtcattgtgatgatcgaaatgagttcaacaaataaataa |
24510316 |
T |
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| Q |
247 |
atcataaaccaaacaacactttcttctatgtaattataataattactaacatagacaaagttatatcaattaagcatagaaaaaccaagaataat |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24510315 |
atcataaaccaaacaacactttcttctatgtaattataataattactaacatagacaaaattatatcaattaagcatagaaaaaccaagaataat |
24510221 |
T |
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Target: scaffold0475 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 10866 - 10938
Alignment:
| Q |
121 |
ctaaattattagtagattgacaaattgcctaactacttctcaaattcatatgtataaaaagtagcatgcatat |
193 |
Q |
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| T |
10866 |
ctaaattattagaggattgacgaattgcctaacttcttctcaaattcacatgtctaaaaggtaacatgcatat |
10938 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 4666543 - 4666471
Alignment:
| Q |
121 |
ctaaattattagtagattgacaaattgcctaactacttctcaaattcatatgtataaaaagtagcatgcatat |
193 |
Q |
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| T |
4666543 |
ctaaattattagaggattgacgaattgcctaacttcttctcaaattcacatgtctaaaaggtaacatgcatat |
4666471 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 14838470 - 14838416
Alignment:
| Q |
124 |
aattattagtagattgacaaattgcctaactacttctcaaattcatatgtataaaaag |
181 |
Q |
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| T |
14838470 |
aattattagtagattgacaacttgcctaacta---ctcaaattcacatgtttaaaaag |
14838416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 27963220 - 27963274
Alignment:
| Q |
124 |
aattattagtagattgacaaattgcctaactacttctcaaattcatatgtataaaaag |
181 |
Q |
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| T |
27963220 |
aattattagtagattgacaacttgcctaacta---ctcaaattcacatgtttaaaaag |
27963274 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 50228551 - 50228667
Alignment:
| Q |
121 |
ctaaattattagtagattgacaaattgcctaactacttctcaaattcatatgtataaaaagtagcatgcata-----tatacattttgatttgtcattgt |
215 |
Q |
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|||||||||| ||||||| |||||||| ||| | ||||||||||||| |||| | ||| ||| |||||||| ||||| || |||| ||||| ||| |
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| T |
50228551 |
ctaaattatttttagattggcaaattgcttaatttcttctcaaattcacatgtctgaaaggtaacatgcataatatgtataccttctgatctgtcaatgt |
50228650 |
T |
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| Q |
216 |
gatgatcgaaatgagtt |
232 |
Q |
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||||||| |||| |||| |
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| T |
50228651 |
gatgatccaaataagtt |
50228667 |
T |
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