View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_25 (Length: 339)
Name: NF17202_low_25
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 40841218 - 40840916
Alignment:
| Q |
13 |
aatattgtatgtttatcatgttgaattttgaacaacgacatgtaagagaaattaaacaccacatattaactctaaaatgataattttcatttctaaatat |
112 |
Q |
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| T |
40841218 |
aatattgtatgtttatcatgttgaattttgaacaacaacatgtaagagaaattaaacaccacatattaactttaaaatgataattttcatttctaaatat |
40841119 |
T |
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| Q |
113 |
gtgacacaatgtcaatatataatctttgaattgactaaattatatataaaaagggtagtactattcctcgtgaagcatatcatcatgaacatttcacgaa |
212 |
Q |
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| T |
40841118 |
gtgtcacaatgtcaatatataatctttgaattgactaaattatatataaaaagggtagtactattcctcgtgaagcatatcatcatgaacatttcacgaa |
40841019 |
T |
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| Q |
213 |
gtgctgtgccaccgttagattaaaagcaaaatagtcttccacaatcatgctttatgcaaatgcattgtcatgatattttcgctatactacttttcgctat |
312 |
Q |
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| T |
40841018 |
gtgctctgccaccgttagattaaaagcaaaatagtcttccacaatcatgctttatgcaaatgcattgtcatgatattttcgctatactacttttcgctat |
40840919 |
T |
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| Q |
313 |
aag |
315 |
Q |
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| T |
40840918 |
aag |
40840916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 5891902 - 5891849
Alignment:
| Q |
165 |
gggtagtactattcctcgtgaagcatatcatcatgaacatttcacgaagtgctg |
218 |
Q |
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| T |
5891902 |
gggtagtgctattcctcgcgaaacatatcatcacgaacatttcacgaagtgctg |
5891849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 5891492 - 5891455
Alignment:
| Q |
243 |
atagtcttccacaatcatgctttatgcaaatgcattgt |
280 |
Q |
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| T |
5891492 |
atagtcatccacaatcatgctttatgcaaatgcattgt |
5891455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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