View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_28 (Length: 323)
Name: NF17202_low_28
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 8985829 - 8985553
Alignment:
| Q |
1 |
acattggtttcattaactttatcact--ccaaatcatattatttctttgcttccatatactctaaaggatacagnnnnnnngg-catcaaacaagccaat |
97 |
Q |
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| T |
8985829 |
acattggcttcattaactttatcactttccaaatcatattatttctttgcttccatatactctaaaggatacagaaaaaaagggcatcaaacaagccaat |
8985730 |
T |
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| Q |
98 |
cttttttatgtaacctttgatctaccgtccatctaaattacgaaaaaggcttccacacgctgctatatcgctatatcccccttgttccaactcaagaagc |
197 |
Q |
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| T |
8985729 |
cttttttatgtaacctttgatccatcgcccatctaaattacgtaaaaggcttc-acacgctgctatatcgctatttcccc-ttgttccaactcaagaagc |
8985632 |
T |
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| Q |
198 |
agattatttacattctaagtattttaaattatgaaacaagtttaatttcaagacttttttaaaatcaaacgtgattttt |
276 |
Q |
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| T |
8985631 |
agattatttacattctaagtattttaatttatgaaacaagtttaatttcaagacatttttaaaatcaaacgtgattttt |
8985553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 8979862 - 8979826
Alignment:
| Q |
271 |
attttttattcaaatcatttacattcgaccactttac |
307 |
Q |
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| T |
8979862 |
attttttattcaaatcatttacattcgaccactttac |
8979826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 1324689 - 1324591
Alignment:
| Q |
82 |
catcaaacaagccaatcttttttatgtaacctttgatctaccgtccatctaaattacgaaaaaggcttccacacgctgctatatcgctatatcccccttg |
181 |
Q |
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| T |
1324689 |
catcacacgagccaatcttcttaatgtaacatttgatccaccgtccatctgaattgtg-aaaagacttccacaccctactatgtcgttat-tcccccttg |
1324592 |
T |
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