View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_29 (Length: 314)
Name: NF17202_low_29
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 30506452 - 30506735
Alignment:
| Q |
1 |
aaatatgccatcgattttgagctgacgaatatgtcacactaagaattgacaatcattttactcctccattaattaa-gaaaaatgatatttaaacaatta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||| || || |
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| T |
30506452 |
aaatatgccatcgattttgagctgacgaatatgtcacactaagagttgacgatcatttcactcctccattaattaaagaaaaatgatatttaaataacta |
30506551 |
T |
|
| Q |
100 |
nnnnnnnacaacttttgtaacaattttctcttttatactcatattttatattcactctctattgctttggtcattatattgttaataaccaaatttcttt |
199 |
Q |
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||||||| |||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||| | || ||||||||||||||||| |
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| T |
30506552 |
tttttttacaacttg----acaattttctcttttatacttatattttgtattcactctctattgttttggccattatgtcgtcaataaccaaatttcttt |
30506647 |
T |
|
| Q |
200 |
atgtattttatttctctaagaggtattcccaacaaataattgttaaaataacattcctcttaattaaagttgtacaaagtgagaccta |
287 |
Q |
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| T |
30506648 |
atgtattttagttctctaagaggtattcccaacaaataattgttaaaataacattcctcttaattaaagttgtacaaagtgagaccta |
30506735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 10731575 - 10731612
Alignment:
| Q |
107 |
acaacttttgtaacaattttctcttttatactcatatt |
144 |
Q |
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| T |
10731575 |
acaacttttgtaacaactttctcttttatactcatatt |
10731612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 48062086 - 48062123
Alignment:
| Q |
107 |
acaacttttgtaacaattttctcttttatactcatatt |
144 |
Q |
| |
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| T |
48062086 |
acaacttttgtaacaactttctctcttatactcatatt |
48062123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 42853606 - 42853643
Alignment:
| Q |
107 |
acaacttttgtaacaattttctcttttatactcatatt |
144 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| |
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| T |
42853606 |
acaacttttgtaacaattttatctcttatactcatatt |
42853643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 26501521 - 26501484
Alignment:
| Q |
107 |
acaacttttgtaacaattttctcttttatactcatatt |
144 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
26501521 |
acaacttttgtgacaattttctctttcatactcatatt |
26501484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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