View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_31 (Length: 308)
Name: NF17202_low_31
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 31377546 - 31377256
Alignment:
| Q |
1 |
tacacgcttttgttgtcaatgtgggactatttatatgtccctttcttgcttctataagcttaaaaagatacatgaaatgtagttcagccgcagctcataa |
100 |
Q |
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| T |
31377546 |
tacacgcttttgttgtcaatgtgggactatttatatgtccctttcttgcttctataagcttaaaaagatacatgaaatgtaattcagcagcagctcataa |
31377447 |
T |
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| Q |
101 |
taatgatattgtaagaaacaatgtgttcttggcagtattattgattcaaaatattgggactaatgatatgatacttatggcaataatgtgttcttagcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31377446 |
taatgatattgtaagaaacaatgtgttcttggcagtattattgattcaaaatattgggactaatgatatgatacttgcggcaataatgtgttcttagcag |
31377347 |
T |
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| Q |
201 |
cttgtttttggcttcaaacgggtgcttttcctccaattttgaactcagtgatcaatgaaggaaagagatgtatattatgattatttgcttt |
291 |
Q |
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| T |
31377346 |
cttgtttttggcttcaaacgggtgcttttcctccaattttgaactcagtgatcaatgaaggaaagagatgtatattacgattatttgcttt |
31377256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 30607241 - 30607141
Alignment:
| Q |
17 |
caatgtgggactatttata-tgtccctttcttgcttctataagcttaaaa--agatacatgaaatgtagttcagccgcagctcataataatgatattgta |
113 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||| || |||||||| ||||||| |||||| |||||||||||| |||||| |||| |
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| T |
30607241 |
caatgtgggactatttatagtgtccctttcttgcttctttaagcttagaagaagatacataaaatgtaattcagcagcagctcataat-atgatactgta |
30607143 |
T |
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| Q |
114 |
ag |
115 |
Q |
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|| |
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| T |
30607142 |
ag |
30607141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 31386379 - 31386276
Alignment:
| Q |
14 |
tgtcaatgtgggactatttata-tgtcccttt-cttgcttctataagcttaaaa--agatacatg--aaatgtagttcagccgcagctcataataatgat |
107 |
Q |
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|||| ||||||||||||||||| ||||||||| ||||||| | |||||||| || ||| |||| ||||||| |||||| |||||||||||||||||| |
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| T |
31386379 |
tgtccatgtgggactatttatagtgtcccttttcttgcttatttaagcttagaagaagaaacatataaaatgtaattcagcagcagctcataataatgat |
31386280 |
T |
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| Q |
108 |
attg |
111 |
Q |
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|||| |
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| T |
31386279 |
attg |
31386276 |
T |
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