View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_32 (Length: 300)
Name: NF17202_low_32
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37937031 - 37937272
Alignment:
| Q |
1 |
aatgccagtgccggtgatgatgtcaaagtaatcaatgatttgagcgtgaggatcgttggtttgtaagcggatctgatcctcaaggtggatcaaggcagcg |
100 |
Q |
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| T |
37937031 |
aatgccagtgccggtgatgatgtcaaagtaatcaatgatttgagcgtgaggatcgttggtttgtaagcggatctgatcctcaaggtggatcaaggcagcg |
37937130 |
T |
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| Q |
101 |
ccggagacaatggcggtggttcctccgccgtcaatgctgagaatgcgagttttggatgttgttccacattgtgaaactgatagccattgttgttctagtt |
200 |
Q |
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| T |
37937131 |
ccggagacaatggcggtggttcctccgccgtcaatgctgagaatgcgagttttggatgttgttccacattgtgaaactgatagccattgttgttctagtt |
37937230 |
T |
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| Q |
201 |
ttgtgaatatctctagtgttactttgctaagctccattagtg |
242 |
Q |
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| T |
37937231 |
ttgtgaatatctctagtgttactttgctaagctccattagtg |
37937272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 32039858 - 32039723
Alignment:
| Q |
20 |
atgtcaaagtaatcaatgatttgagcgtgaggatcgttggtttgtaagcggatctgatcctcaaggtggatcaaggcagcgccggagacaatggcggtgg |
119 |
Q |
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| T |
32039858 |
atgtcgaagaaatcaacgacgtgagcgtgaggatcagaggtttgaagacggatctgatcttcgagatggattaaagcagcgccggctacaatggcggttg |
32039759 |
T |
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| Q |
120 |
ttcctccgccgtcaatgctgagaatgcgagttttgg |
155 |
Q |
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| T |
32039758 |
ttcctccgccgtcaatgctgagaatgcgagttttgg |
32039723 |
T |
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