View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_35 (Length: 279)
Name: NF17202_low_35
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 32958017 - 32958257
Alignment:
| Q |
18 |
tttccctcttattatttttggaagtatatatatacacacatagaattagaagcgtgatatttatgcgtggatagtaggttttataaatggcaaaaatgga |
117 |
Q |
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| T |
32958017 |
tttccctcttattatttttggaagtatatatatacaca--tagaattagaagcgtgatatttatgcgtggatagtaggttttataaatggcaaaaatgga |
32958114 |
T |
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| Q |
118 |
tgagtgatttgtttatttnnnnnnnnnnnnnnncaggaaggtattgcagtaggaaggacatttgcagctcttggaaactataaagtggatggaaataagg |
217 |
Q |
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| T |
32958115 |
tgagtgatttgtttatttaaaaaaaataaa---caggaaggtattgcagtaggaaggacatttgcagctcttggaaactataaagtggatggaaataagg |
32958211 |
T |
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| Q |
218 |
aaatgatggcaattgggtgtatgaatgtggttggatccttcacttc |
263 |
Q |
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| T |
32958212 |
aaatgatggcaattgggtgtatgaatgtggttggatccttcacttc |
32958257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 32967558 - 32967661
Alignment:
| Q |
151 |
caggaaggtattgcagtaggaaggacatttgcagctcttggaaactataaagtggatggaaataaggaaatgatggcaattgggtgtatgaatgtggttg |
250 |
Q |
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| T |
32967558 |
caggaaggaattgcagttgggagaacatttgcagctataagaaactacaaagttgatggaaataaggaaatgatggcaattgggttcatgaatgtggttg |
32967657 |
T |
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| Q |
251 |
gatc |
254 |
Q |
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|||| |
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| T |
32967658 |
gatc |
32967661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 44011100 - 44011018
Alignment:
| Q |
151 |
caggaaggtattgcagtaggaaggacatttgcagctcttggaaactataaagtggatggaaataaggaaatgatggcaattgg |
233 |
Q |
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|||||||| ||||||||||| || ||||||||||| ||| || || ||||||||||||| || ||||||||||| ||||| |
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| T |
44011100 |
caggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattgg |
44011018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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