View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_38 (Length: 254)
Name: NF17202_low_38
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_38 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 25802859 - 25802616
Alignment:
| Q |
11 |
catcatcatcatgtggtactaaacaaaactaacatacacgtcacaacaaaagacaaaagatagattctgttatgttccatgatattcaagccctagacat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25802859 |
catcatcatcatgtggtactaaacaaaactaacatacacgtcacaacaaaagacaaaagatagattctgttatattccatgatattcaagccctagacat |
25802760 |
T |
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| Q |
111 |
gagtgccccaacaacaccagcaatgagagtcgtaggatcacccaaaacagctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802759 |
gagtgccccaacaacaccagcaatgagagtcgtaggatcacccaaaaccgctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttc |
25802660 |
T |
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| Q |
211 |
accttctttcctttacttcctctacttcctctgcaattatgtgc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802659 |
accttctttcctttacttcctctacttcctctgcaattatgtgc |
25802616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 105595 - 105840
Alignment:
| Q |
11 |
catcatcatcatgtggtactaaacaaaactaacatacacgtcacaacaaaagacaaaagatagattctgttatgttccatgatattcaagccctagacat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105595 |
catcatcatcatgtggtactaaacaaaactaacatacacgtcacaacaaaagacaaaagatagattctgttatgttccatgatattcaagccctagacat |
105694 |
T |
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| Q |
111 |
gagtgccccaacaacaccagcaatgagagtcgtaggatcacccaaaacagctgaaatcacaatctgcaccgcaaatccagcaatctcacaacac--tttt |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
105695 |
gagcgccccaacaacaccagcaatgagagtcgtaggatcacccaaaaccgctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttt |
105794 |
T |
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| Q |
209 |
tcaccttctttcctttacttcctctacttcctctgcaattatgtgc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105795 |
tcaccttctttcctttacttcctctacttcctctgcaattatgtgc |
105840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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