View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17202_low_42 (Length: 244)

Name: NF17202_low_42
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17202_low_42
NF17202_low_42
[»] chr4 (14 HSPs)
chr4 (20-229)||(21227149-21227358)
chr4 (21-146)||(6793361-6793486)
chr4 (20-146)||(6625825-6625951)
chr4 (21-145)||(6716422-6716546)
chr4 (21-138)||(6592202-6592319)
chr4 (35-146)||(7889651-7889762)
chr4 (21-145)||(6833312-6833436)
chr4 (20-140)||(6537038-6537158)
chr4 (20-141)||(6549362-6549483)
chr4 (66-146)||(10034800-10034880)
chr4 (87-142)||(6648131-6648186)
chr4 (20-145)||(6770435-6770560)
chr4 (175-211)||(21232734-21232770)
chr4 (143-175)||(21232632-21232664)
[»] chr7 (5 HSPs)
chr7 (20-145)||(18925468-18925593)
chr7 (20-146)||(34719845-34719971)
chr7 (44-145)||(34734311-34734412)
chr7 (20-146)||(34715082-34715208)
chr7 (44-145)||(34729747-34729848)
[»] scaffold0813 (1 HSPs)
scaffold0813 (70-145)||(2130-2205)
[»] scaffold0373 (1 HSPs)
scaffold0373 (58-145)||(12773-12860)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 21227149 - 21227358
Alignment:
Q  20 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21227149 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggatagaacgaggagatcagatctcaggctcactcttgcaa 21227248  T
Q  120 gcaatcggacagtctagaatttctatttttacgaataggtgttcatgatccattttcgtaaaagtatatttgtaaacaactccattatttgatatgtact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21227249 gcaatcggacagtctagaatttctatttttacgaataggtgttcatgatccattttcgtaaaagtatatttgtaaacaactccattatttgatatgtact 21227348  T
Q  220 actacctttg 229  Q
    ||||||||||    
T  21227349 actacctttg 21227358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 6793361 - 6793486
Alignment:
Q  21 tcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaag 120  Q
    ||||||||| ||||||| |||| |||||| |||||| |||||||||||||||| |||| |||| ||||||||||||| ||||||  |||||| |||| ||    
T  6793361 tcacatctctattcctcccttcaaaatgcagggattcatgttttcaaagacgatgatgagattcaacgaggagatcatatctcaatctcactgttgcgag 6793460  T
Q  121 caatcggacagtctagaatttctatt 146  Q
    |||| |||||||||||||||||||||    
T  6793461 caattggacagtctagaatttctatt 6793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 6625951 - 6625825
Alignment:
Q  20 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaa 119  Q
    |||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||   ||||| |||| |    
T  6625951 ttcacatctctattcatctcttcaaaatgccgggatttatgttttcaaagacgacgatgaaattcaacgaggcgatcagatctcaatttcactattgcga 6625852  T
Q  120 gcaatcggacagtctagaatttctatt 146  Q
    ||||||||||| |||||||||| ||||    
T  6625851 gcaatcggacactctagaatttttatt 6625825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 6716422 - 6716546
Alignment:
Q  21 tcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaag 120  Q
    ||||||||| ||||||||||||  | ||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||||| | ||||||   | |||    
T  6716422 tcacatctccattcctctcttcacagtgcagggatttatgctttcaaagacgacgatgggattcaacgaggagatcaaatctcggtctcactggggaaag 6716521  T
Q  121 caatcggacagtctagaatttctat 145  Q
    |||| | ||||||||||||||||||    
T  6716522 caattgaacagtctagaatttctat 6716546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 6592319 - 6592202
Alignment:
Q  21 tcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaag 120  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||| |||||| || | |||| ||||||||||||| ||||||  |||||| |||| ||    
T  6592319 tcacatctctattcctctcttcaaaatgcggggatttatgttttcagagacgatgacgagattcaacgaggagatcatatctcaatctcactgttgcgag 6592220  T
Q  121 caatcggacagtctagaa 138  Q
    |||| | |||||||||||    
T  6592219 caattgaacagtctagaa 6592202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 7889762 - 7889651
Alignment:
Q  35 ctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaagcaatcggacagtct 134  Q
    |||||||| |||| | ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||  | |||||  |||||||||||    
T  7889762 ctctcttcaaaattccgggctttatgttttcaaagacgatgatgggattcaacgaggagatcagatctcagtcgcactaatccaagctgtcggacagtct 7889663  T
Q  135 agaatttctatt 146  Q
    | ||||||||||    
T  7889662 aaaatttctatt 7889651  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 6833312 - 6833436
Alignment:
Q  21 tcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaag 120  Q
    |||||||||  ||||||||||| |||||  |||||| ||| ||||||||||||  | | |||| ||||||||||||||||||||  |||||| |||| ||    
T  6833312 tcacatctcttttcctctcttcaaaatgaagggattcatgctttcaaagacgataacgagattcaacgaggagatcagatctcaatctcactgttgcgag 6833411  T
Q  121 caatcggacagtctagaatttctat 145  Q
    |||| || |||||||||||||||||    
T  6833412 caattgggcagtctagaatttctat 6833436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 6537158 - 6537038
Alignment:
Q  20 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaa 119  Q
    ||||||| | ||||||||||||| |||| | | |||| |||||||||||||||| || | ||| |||||||||||||||||||||   ||||| |||| |    
T  6537158 ttcacatttgaattcctctcttcaaaattccgcgattcatgttttcaaagacgatgacgagatcgaacgaggagatcagatctcaatatcactgttgcga 6537059  T
Q  120 gcaatcggacagtctagaatt 140  Q
    ||||| |||| ||||||||||    
T  6537058 gcaattggacggtctagaatt 6537038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 6549483 - 6549362
Alignment:
Q  20 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaa 119  Q
    |||||||||  |||||||||||  |||||| |||||| ||||||||||||||||      |||| |||||||||||||||| |||  |||||| || | |    
T  6549483 ttcacatctgcattcctctcttgaaaatgcagggattcatgttttcaaagacgatttcaagattcaacgaggagatcagatatcaatctcactgtttcga 6549384  T
Q  120 gcaatcggacagtctagaattt 141  Q
    ||||| ||||||||||||||||    
T  6549383 gcaattggacagtctagaattt 6549362  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 10034800 - 10034880
Alignment:
Q  66 aaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaagcaatcggacagtctagaatttctatt 146  Q
    |||||||| || |||||| |||| |||||| ||||||||| |||| | || |||||||| || ||||||||||||||||||    
T  10034800 aaagacgatgacgggattcaacgtggagataagatctcagtctcattgttacaagcaattggtcagtctagaatttctatt 10034880  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 6648131 - 6648186
Alignment:
Q  87 cgaggagatcagatctcaggctcactcttgcaagcaatcggacagtctagaatttc 142  Q
    ||||||||||| ||||||| |||||| |||| |||||||||||| |||||||||||    
T  6648131 cgaggagatcaaatctcagtctcactgttgcgagcaatcggacaatctagaatttc 6648186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 6770435 - 6770560
Alignment:
Q  20 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaa 119  Q
    |||||||||| |||||||||||| |||| | |  |||| || ||| | |||||| |||| | || |||||||||| || || |||  | |||| |||| |    
T  6770435 ttcacatctctattcctctcttcaaaattcagctatttttgcttttagagacgatgatgagcttcaacgaggagagcatatatcaatcgcactgttgcga 6770534  T
Q  120 gcaatcggacagtctagaatttctat 145  Q
    ||||| ||||||||||||||||||||    
T  6770535 gcaattggacagtctagaatttctat 6770560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 21232734 - 21232770
Alignment:
Q  175 tcgtaaaagtatatttgtaaacaactccattatttga 211  Q
    |||||||| ||||||||||||||||||||||||||||    
T  21232734 tcgtaaaattatatttgtaaacaactccattatttga 21232770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 21232632 - 21232664
Alignment:
Q  143 tatttttacgaataggtgttcatgatccatttt 175  Q
    ||||||||||||||||||||| |||||||||||    
T  21232632 tatttttacgaataggtgttcctgatccatttt 21232664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 18925468 - 18925593
Alignment:
Q  20 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaa 119  Q
    |||||||||| || | ||||||| |||||| || ||| |||||||||||||| | |||| |||| ||||||||||||||||||||  |||||| ||| ||    
T  18925468 ttcacatctctatacttctcttcaaaatgccggtattcatgttttcaaagacaatgatgagattcaacgaggagatcagatctcattctcacttttgaaa 18925567  T
Q  120 gcaatcggacagtctagaatttctat 145  Q
    ||||| | | ||| ||||||||||||    
T  18925568 gcaattgaagagtgtagaatttctat 18925593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 34719971 - 34719845
Alignment:
Q  20 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaa 119  Q
    |||||||||| || ||||||||| ||||||| | ||| ||||||| | ||||||  ||| |||| | ||||| ||||||||||| | |||||| |||| |    
T  34719971 ttcacatctctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattcagcgaggtgatcagatctcggtctcactgttgcga 34719872  T
Q  120 gcaatcggacagtctagaatttctatt 146  Q
    ||||| || ||||||||||||||||||    
T  34719871 gcaattgggcagtctagaatttctatt 34719845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 34734412 - 34734311
Alignment:
Q  44 aaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaagcaatcggacagtctagaatttct 143  Q
    ||||||||| ||||||||||| | || ||| |||| |||| ||||||| |||||| ||||||  ||| | |||||||| || ||||||||||||||||||    
T  34734412 aaatgctggaatttatgtttttagaggcgatgatgagattcaacgaggtgatcaggtctcagtgtcattgttgcaagccataggacagtctagaatttct 34734313  T
Q  144 at 145  Q
    ||    
T  34734312 at 34734311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 34715208 - 34715082
Alignment:
Q  20 ttcacatctcaattcctctcttcgaaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaa 119  Q
    |||||||||| || ||||||||| ||||||||| ||||||||||| | ||||||  ||| |||| ||| ||||||  ||||||||| ||  || ||| ||    
T  34715208 ttcacatctctatacctctcttcaaaatgctggaatttatgtttttagagacgataatgagattcaaccaggagaaaagatctcagtctaccttttggaa 34715109  T
Q  120 gcaatcggacagtctagaatttctatt 146  Q
    |||||  |||||| |||||||| ||||    
T  34715108 gcaattagacagtatagaatttgtatt 34715082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 34729848 - 34729747
Alignment:
Q  44 aaatgctgggatttatgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaagcaatcggacagtctagaatttct 143  Q
    ||||||||| ||||||||||| | ||| || |||| |||| ||||||| |||||||||||||  ||| | ||||||||||| |  ||||||| |||||||    
T  34729848 aaatgctggaatttatgtttttagagatgatgatgagattcaacgaggtgatcagatctcagcgtcattgttgcaagcaattgagcagtctaaaatttct 34729749  T
Q  144 at 145  Q
    ||    
T  34729748 at 34729747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 2205 - 2130
Alignment:
Q  70 acgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaagcaatcggacagtctagaatttctat 145  Q
    |||||||||||| | ||||||||||||| ||||| | ||||||   | ||||||| | ||||||||||||||||||    
T  2205 acgacgatgggagttaacgaggagatcaaatctcggtctcactggggaaagcaattgaacagtctagaatttctat 2130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 12860 - 12773
Alignment:
Q  58 atgttttcaaagacgacgatgggattgaacgaggagatcagatctcaggctcactcttgcaagcaatcggacagtctagaatttctat 145  Q
    |||||||||||||||| |||| |||| | ||||||||||| ||||||  |||||| |  | | |||| || |||||||||||||||||    
T  12860 atgttttcaaagacgatgatgagattcaccgaggagatcatatctcaatctcactgtgccgaccaattggccagtctagaatttctat 12773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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