View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_43 (Length: 244)
Name: NF17202_low_43
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 52385535 - 52385744
Alignment:
| Q |
20 |
aagatcaaaatttccttcacaattggcctattccccaccacagcctcctcctacctcaatttctgaacctcaaacaactctagagagaaacatgatgttt |
119 |
Q |
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| T |
52385535 |
aagatcaaaatttccttcacaattggcctattccccaccacagcctcctcctacctcaatttctgaacctcaaacaactctagagagaaacatgatgttt |
52385634 |
T |
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| Q |
120 |
gccattgccacatcaaaccctagtgnnnnnnncatccaattagttgcagatccagttaccatgcaaaatagtactatgaaggatgatgtaacaaatctta |
219 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52385635 |
gccattgccacatcaaaccctagtgaaaaaaacatccaattagttgcagatccaattaccatgcaaaatagtactatgaaggatgatgtaacaaatctta |
52385734 |
T |
|
| Q |
220 |
ctaataaagt |
229 |
Q |
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|||||||||| |
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| T |
52385735 |
ctaataaagt |
52385744 |
T |
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