View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_47 (Length: 238)
Name: NF17202_low_47
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 35878922 - 35879142
Alignment:
| Q |
18 |
cccataagaaaggaaccatcctatggcctgtaattccccacaacgactcatttaggagt-atcttcgtttcttcttttcctagctagtttatta------ |
110 |
Q |
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| T |
35878922 |
cccagaagaaaggaaccatcctatggcctgtaattccccacaccgactcatttaggagttatcttcgtttcttcttttcctagttagtttattagtagta |
35879021 |
T |
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| Q |
111 |
aattgccgtgtatgtatcacaatgcaataaataagccaataataattagtccttttgtaaaag-aaaaatccaa---taataattagaaacaaagggtgg |
206 |
Q |
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| T |
35879022 |
aattgccgtgtatgtatcacaatgcaataaataagccaataataattagtccttttgcaaaagaaaaaatccaatagtaataattagaaacaaagggtgg |
35879121 |
T |
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| Q |
207 |
tccaaatcttttttagtctgt |
227 |
Q |
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||||||||||||||||||||| |
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| T |
35879122 |
tccaaatcttttttagtctgt |
35879142 |
T |
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