View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_49 (Length: 235)
Name: NF17202_low_49
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 48209612 - 48209809
Alignment:
| Q |
20 |
aaacttataacatgctaagtatgctattgagctgcaatgtggtacgtagagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaat |
119 |
Q |
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| T |
48209612 |
aaacttataacatgctaagtatgctattgagctgcaatgttgtacgtagagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaat |
48209711 |
T |
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| Q |
120 |
tacgtaaccattagctagctagatcaaagctctccttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcattcct |
217 |
Q |
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| T |
48209712 |
tacgtaaccattagctagctagatcaaagctcttcttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcattcct |
48209809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 48205260 - 48205376
Alignment:
| Q |
38 |
gtatgctattgagctgcaatgtggtacgtagagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaattac--gtaa---ccatta |
132 |
Q |
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| T |
48205260 |
gtatgctattgaactgcaatgttgtacaaagagattcacatag-ccaaatgaacaaaaaacataagaaatctgaaacataattacatgtaacttccatta |
48205358 |
T |
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| Q |
133 |
gctagctagatcaaagct |
150 |
Q |
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| T |
48205359 |
gctagctggatcaaagct |
48205376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 32586647 - 32586715
Alignment:
| Q |
150 |
tctccttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcattccta |
218 |
Q |
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| T |
32586647 |
tctccttccttgacacggaagcaaggtgatacatgagctggaatgtttgaatgcctcttctcataccta |
32586715 |
T |
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