View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17202_low_50 (Length: 234)

Name: NF17202_low_50
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17202_low_50
NF17202_low_50
[»] chr3 (3 HSPs)
chr3 (1-205)||(40840489-40840696)
chr3 (1-64)||(1632868-1632932)
chr3 (36-64)||(26443045-26443073)
[»] chr1 (3 HSPs)
chr1 (1-59)||(43537134-43537193)
chr1 (36-64)||(29657460-29657488)
chr1 (1-64)||(35413086-35413150)
[»] chr2 (1 HSPs)
chr2 (1-64)||(19945708-19945772)
[»] scaffold0194 (1 HSPs)
scaffold0194 (36-64)||(27093-27121)
[»] chr8 (1 HSPs)
chr8 (36-64)||(25124466-25124494)
[»] chr6 (1 HSPs)
chr6 (36-64)||(3855720-3855748)
[»] chr5 (1 HSPs)
chr5 (1-64)||(3040244-3040308)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 40840696 - 40840489
Alignment:
Q  1 aggtaatggtgtgtaatcaaagaaagagttaacctatacactgtcttgaaattttcttgataaactatcatttccctttaatacattcagtaaccagtta 100  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  40840696 aggtaatgatgtataatcaaagaaagagttaacctatacactctcttgaaattttcttgataaagtatcatttccctttaatacattcagtaaccaatta 40840597  T
Q  101 agtttaatc-----gaaagttgaaaccttcatatgtgtcgtacatcgattgatccacaattgtttctttgagacatgtgtggctccataattttgatggt 195  Q
    ||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  40840596 agtttaatttaattgaaagttgaaaccttcatatgtgtcgtacatcgattgatccacaattgtttctttgagaca--tgtagctccataattttgatggt 40840499  T
Q  196 tagtttttga 205  Q
    ||||||||||    
T  40840498 tagtttttga 40840489  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1632868 - 1632932
Alignment:
Q  1 aggtaatggtgtgtaatcaaagaaa-gagttaacctatacactgtcttgaaattttcttgataaa 64  Q
    ||||||||||||||||| ||||||| | ||||||  ||||||||||||| |||||| ||||||||    
T  1632868 aggtaatggtgtgtaattaaagaaacgtgttaacaaatacactgtcttggaatttttttgataaa 1632932  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 26443045 - 26443073
Alignment:
Q  36 atacactgtcttgaaattttcttgataaa 64  Q
    |||||||||||||||||||||||||||||    
T  26443045 atacactgtcttgaaattttcttgataaa 26443073  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43537193 - 43537134
Alignment:
Q  1 aggtaatggtgtgtaatcaaagaaa-gagttaacctatacactgtcttgaaattttcttg 59  Q
    ||||||||||||||||| ||||||| | ||||||  ||||||||||||||||||||||||    
T  43537193 aggtaatggtgtgtaattaaagaaatgtgttaacaaatacactgtcttgaaattttcttg 43537134  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 29657460 - 29657488
Alignment:
Q  36 atacactgtcttgaaattttcttgataaa 64  Q
    |||||||||||||||||||||||||||||    
T  29657460 atacactgtcttgaaattttcttgataaa 29657488  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35413086 - 35413150
Alignment:
Q  1 aggtaatggtgtgtaatcaaagaaaga-gttaacctatacactgtcttgaaattttcttgataaa 64  Q
    ||||||| ||||||||| || |||||  ||||||  ||||||| |||||||||||||||||||||    
T  35413086 aggtaatagtgtgtaattaaggaaaggtgttaacaaatacactctcttgaaattttcttgataaa 35413150  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19945772 - 19945708
Alignment:
Q  1 aggtaatggtgtgtaatcaaagaaagag-ttaacctatacactgtcttgaaattttcttgataaa 64  Q
    ||||||||||||||||| || ||||||  |||||  |||||||||||| ||||||||||||||||    
T  19945772 aggtaatggtgtgtaattaaggaaagatattaacaaatacactgtcttaaaattttcttgataaa 19945708  T

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Target: scaffold0194 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 27121 - 27093
Alignment:
Q  36 atacactgtcttgaaattttcttgataaa 64  Q
    |||||||||||||||||||||||||||||    
T  27121 atacactgtcttgaaattttcttgataaa 27093  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 25124466 - 25124494
Alignment:
Q  36 atacactgtcttgaaattttcttgataaa 64  Q
    |||||||||||||||||||||||||||||    
T  25124466 atacactgtcttgaaattttcttgataaa 25124494  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 3855748 - 3855720
Alignment:
Q  36 atacactgtcttgaaattttcttgataaa 64  Q
    |||||||||||||||||||||||||||||    
T  3855748 atacactgtcttgaaattttcttgataaa 3855720  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3040308 - 3040244
Alignment:
Q  1 aggtaatggtgtgtaatcaaagaaaga-gttaacctatacactgtcttgaaattttcttgataaa 64  Q
    ||||||||||||||||| || |||||  |||| |  |||||||||||| ||||||||||||||||    
T  3040308 aggtaatggtgtgtaattaaggaaaggtgttagcaaatacactgtcttaaaattttcttgataaa 3040244  T

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