View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_56 (Length: 206)
Name: NF17202_low_56
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 45506576 - 45506402
Alignment:
| Q |
15 |
tagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcct |
114 |
Q |
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| T |
45506576 |
tagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcct |
45506477 |
T |
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| Q |
115 |
aagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgt |
189 |
Q |
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| T |
45506476 |
aagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgt |
45506402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 45512036 - 45511862
Alignment:
| Q |
15 |
tagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcct |
114 |
Q |
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| T |
45512036 |
tagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcct |
45511937 |
T |
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| Q |
115 |
aagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgt |
189 |
Q |
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| T |
45511936 |
aagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgt |
45511862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 38118164 - 38118316
Alignment:
| Q |
38 |
aaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcctaagctatctcaatggtcaaagct |
137 |
Q |
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| T |
38118164 |
aaagtttggatcaaagggtctaaaatgaaaaactgggaaaccatgtcaaggaattggggtgttaactggcaaagcttgagctatctaaatggtcagagcc |
38118263 |
T |
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| Q |
138 |
tatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgtg |
190 |
Q |
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| T |
38118264 |
tgtccttcagagtccaactcagtaatggaaagactcgtacagctattaatgtg |
38118316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 38165800 - 38165894
Alignment:
| Q |
38 |
aaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcctaagctatctcaatggtca |
132 |
Q |
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| T |
38165800 |
aaagtttggatcaaagggtctaaaatgagaaactgggaatctatgtcaagaaattggggtgctaactggcaaagcttaagctatctaaatggtca |
38165894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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