View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_7 (Length: 581)
Name: NF17202_low_7
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Complemental strand, 40353778 - 40353239
Alignment:
| Q |
19 |
cagatgaaagcaaatcatggtcttctttattactttatctagaagatattcatacaatgtgaccaagatgaataccgagtctcaaacctacacaactttt |
118 |
Q |
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| T |
40353778 |
cagatgaaagcaaatcatggtcttctttattactttatcaagaagatattcatacaatgtgaccaagatgaatgccgagtctcaaacctacacaactttt |
40353679 |
T |
|
| Q |
119 |
gtatttacaacactctaaagatcaaaaaggtaaatttgtcactgctgtttttggacacagttatgggtaatttgagtaacataaatatgatctattatcc |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40353678 |
gtatttacaacactctaaagaacaaaaaggtaaatttgtcactgctgtttttggacacagttatgtgtaatttgagtaacataaatatgatctattatcc |
40353579 |
T |
|
| Q |
219 |
gataatgttgagtaagataatgatagaccaaggtgtgataacnnnnnnnnnnacaaattgtatacggttgaacaatgtaagtttgatcataaacttagta |
318 |
Q |
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| T |
40353578 |
aataatgttgagtaagataatgatagaccaaggtgtgataatttttttttttacaaattgtatacggttgaacaatgtaagtttgatcataaacttagta |
40353479 |
T |
|
| Q |
319 |
caaaattgtttggagcggagcaatcgatggtactgaatttctctannnnnnncaaaaattaagc------aattgagatttcatcgtatatagattatgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |||||| ||| |||||||||||||||| |
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| T |
40353478 |
caaaattgtttggagcggagcaatcgatggtactgaatttctttattttttcaaaaaattaagcagttgaacttgagagttcttcgtatatagattatga |
40353379 |
T |
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| Q |
413 |
agatagtgcaggaaatgaagaattgaattcatactagtgtgtcaatgtccctttattgttcatgtttaatatatttaattttaatttccgaaggtttgga |
512 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40353378 |
agatagtgcaggaaatgaagaattgaattcattctagtgtgtcaatgtccctttattgtttatgtttaatatatttaattttaatttccgaaggtttgga |
40353279 |
T |
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| Q |
513 |
tttttctttttagg--ataatgttaaagagatagatctact |
551 |
Q |
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| ||| |||||||| ||||||||||||||||||||||||| |
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| T |
40353278 |
tattt-tttttaggatataatgttaaagagatagatctact |
40353239 |
T |
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