View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17202_low_8 (Length: 580)

Name: NF17202_low_8
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17202_low_8
NF17202_low_8
[»] chr1 (3 HSPs)
chr1 (21-555)||(39210040-39210559)
chr1 (414-546)||(24036791-24036927)
chr1 (227-298)||(7673907-7673978)
[»] chr8 (3 HSPs)
chr8 (25-388)||(27510436-27510799)
chr8 (414-573)||(27513624-27513783)
chr8 (455-573)||(8675126-8675245)
[»] chr3 (1 HSPs)
chr3 (443-552)||(9461180-9461298)
[»] chr2 (2 HSPs)
chr2 (424-536)||(38950770-38950885)
chr2 (257-298)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (488-540)||(18331979-18332031)
chr6 (419-486)||(18331878-18331945)
[»] chr4 (2 HSPs)
chr4 (247-385)||(42091774-42091912)
chr4 (204-362)||(31949210-31949368)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 21 - 555
Target Start/End: Complemental strand, 39210559 - 39210040
Alignment:
Q  21 atagacaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttatagaag---gtagtgggaagtaaaagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  39210559 atagacaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttatagaagaaggtagtgggaagtaaaagg 39210460  T
Q  118 gcagaaaaaccatatggtatgaatggattaacgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaact 217  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210459 gcagaagaaccatatggtatgaagggatta-cgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaact 39210361  T
Q  218 catctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgataaaattctttaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |    
T  39210360 catctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaattcttta-a 39210262  T
Q  318 aaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataata 417  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  39210261 aaatgtccaaccgtcagtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataata 39210162  T
Q  418 tatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggctt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||| |||||||||||||||||||||||    
T  39210161 tatattctacactcacaacattggaatctaatctattcatattcaaattag----------------ttcaaaaaaatcaacctcttcatcatcaggctt 39210078  T
Q  518 gcagatagtttcatcaacttcccttgtattttcaaggt 555  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39210077 gcagatagtttcatcaacttcccttgtattttcaaggt 39210040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 414 - 546
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  414 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 512  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  513 ----ggcttgcagatagtttcatcaacttcccttgtat 546  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 7673907 - 7673978
Alignment:
Q  227 gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 298  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |  |||| |||||||||||||||||    
T  7673907 gcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa 7673978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 25 - 388
Target Start/End: Original strand, 27510436 - 27510799
Alignment:
Q  25 acaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttatagaaggtagtgggaagtaaaagggcagaaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||     
T  27510436 acaatcatacaactcaccaacattccaaaagtaacgtcagaagaggttaactcctaatcaattgtgttataaaaggtagtgggaagtaaaagggcagaag 27510535  T
Q  125 aaccatatggtatgaatggattaacgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc 224  Q
    |||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510536 aaccatatggtatgaaggaatttacgtacgcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc 27510635  T
Q  225 atgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattctttaaaaaatgt 323  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||    
T  27510636 atgtatattcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattcttt-aaaaatgt 27510734  T
Q  324 ccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 388  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510735 ccaaccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 27510799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 414 - 573
Target Start/End: Original strand, 27513624 - 27513783
Alignment:
Q  414 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 513  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  514 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcatctc 573  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctc 27513783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 455 - 573
Target Start/End: Complemental strand, 8675245 - 8675126
Alignment:
Q  455 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 553  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  554 gtcttcggcaccttcatctc 573  Q
    ||||||||||||||| ||||    
T  8675145 gtcttcggcaccttcttctc 8675126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 443 - 552
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
Q  443 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 533  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  534 acttcccttgtattttcaa 552  Q
    |||||| |  |||||||||    
T  9461198 acttccttcttattttcaa 9461180  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 424 - 536
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  424 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 517  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  518 gcagatagtttcatcaact 536  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
Q  257 gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 298  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  27592805 gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa 27592764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 488 - 540
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  488 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 540  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  419 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 486  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 247 - 385
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
Q  247 agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact 345  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||  | |  ||||||||| |||| | | |||||| ||   |||||| |||    
T  42091774 agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact 42091872  T
Q  346 ttctcgttcctctttttgacagccacctcaaactcattct 385  Q
    ||| ||||||||||||  ||||| ||||||| ||||||||    
T  42091873 ttcccgttcctcttttccacagctacctcaatctcattct 42091912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 362
Target Start/End: Complemental strand, 31949368 - 31949210
Alignment:
Q  204 aggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga 303  Q
    |||||||||||| | | ||||||||| ||| || ||  | | ||||||||| ||||||||||||||||| |  |||||||||| |||| ||||||  | |    
T  31949368 aggatacaccaattaaactccatgcagatttcttaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatccca 31949269  T
Q  304 -taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctcttttt 362  Q
     ||||  ||||| |||||||||||||| || |||||||| ||  || ||||| |||||||    
T  31949268 ttaaagctcttt-aaaaatgtccaaccatcagtaaaataaaccctcccgttcttcttttt 31949210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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