View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_low_9 (Length: 548)
Name: NF17202_low_9
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 52699664 - 52700196
Alignment:
| Q |
1 |
taaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699664 |
taaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccga |
52699763 |
T |
|
| Q |
101 |
aaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagcattggttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699764 |
aaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagcattggttgaaa |
52699863 |
T |
|
| Q |
201 |
agacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699864 |
agacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgt |
52699963 |
T |
|
| Q |
301 |
gggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699964 |
gggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagt |
52700063 |
T |
|
| Q |
401 |
agtgctttggtgaagactgttaccgctgcgaccggaggacaagataaagggtggttaagaaggaaggatcttaatgaaagcaggttggattggttcttct |
500 |
Q |
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| T |
52700064 |
agtgctttggtgaagactgttaccgctacgaccggaggacaagataaagggtggttaagaaggaaggatcttaatgaaagcaggttggattggttcttct |
52700163 |
T |
|
| Q |
501 |
ggatattgacagttctcaatgctgtcaatttct |
533 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
52700164 |
ggatattgacagttctcaatgctgtcaatttct |
52700196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 53 - 533
Target Start/End: Original strand, 52713993 - 52714470
Alignment:
| Q |
53 |
ctcatacttatacccttatatgagagatttataatcccaattctccgaaaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttg |
152 |
Q |
| |
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||||||||| |||| || || |||||||| ||||||||| ||||||| || |||||||||||| ||| ||||||||||| |||||||||||||| |||| |
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| T |
52713993 |
ctcatacttgtacctttctacgagagattcataatcccatttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggtgttg |
52714092 |
T |
|
| Q |
153 |
gactttttgtctcaatcatcgctatggcttcagcagcattggttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggtt |
252 |
Q |
| |
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| ||||| ||||||||||||||||||||||||| ||||| |||||||| | |||||| || ||| |||| | || |||||||||||||||||||| |
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| T |
52714093 |
ggcttttcatctcaatcatcgctatggcttcagctgcattagttgaaaaaaggagacgcgatcaccacccgcaaccaaatagcatgagtgtgttttggtt |
52714192 |
T |
|
| Q |
253 |
gttacctcaattctttctaatgggtagtgctgaagtttttacctatgtgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtatt |
352 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| || |||||||| ||||| ||||||||||||||| |
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| T |
52714193 |
gttacctcaattctttctaattggtactgctgaagtttttacctatgtgggacagttagaatttttttacgatgaggcaacggatgggacaaaaagtatt |
52714292 |
T |
|
| Q |
353 |
agtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtgctttggtgaagactgttaccgctgcgaccggaggacaagataaagggt |
452 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||| |||| |||||||||||||| | || | ||| || ||||||||||| ||||||| |
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| T |
52714293 |
agtagtgcaatgtttttgtctaagattggaattggaagttggttaagtactgctttggtgaagattattgtagatgcaactggaggacaagagaaagggt |
52714392 |
T |
|
| Q |
453 |
ggttaagaaggaaggatcttaatgaaagcaggttggattggttcttctggatattgacagttctcaatgctgtcaatttct |
533 |
Q |
| |
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|| | |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52714393 |
ggct---aaggaataatcttaatgaaagcaagttggattggttcttctggatattgacgattctcaatgctgtcaatttct |
52714470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 533
Target Start/End: Original strand, 52722967 - 52723492
Alignment:
| Q |
5 |
ttcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccgaaaat |
104 |
Q |
| |
|
||||||||||||| || ||||| | || |||||||||| || | | ||||||||| |||| | || |||||||| ||||||||| ||||||| |||| |
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| T |
52722967 |
ttcgaaatcccaacaggttctgtccctgtctttgctgccatcaacggcctcatacttgtacctctctacgagagattaataatcccatttctccgcaaat |
52723066 |
T |
|
| Q |
105 |
ttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagcattggttgaaaagac |
204 |
Q |
| |
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|||| ||||| ||| ||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||| |||||||| | |
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|
| T |
52723067 |
ttacaggccatcaccgtggcatcacatcgttacaacgaatgggtgttgggctttttatctcaatcatcgctatggcttcagctgcattagttgaaaaaag |
52723166 |
T |
|
| Q |
205 |
gagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgtggga |
304 |
Q |
| |
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|||||| || |||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
52723167 |
gagacgcgatcactacccgcaaccaaatagcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagtttttacctatgtggga |
52723266 |
T |
|
| Q |
305 |
cagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtg |
404 |
Q |
| |
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||||| || ||||| || |||||||| || || |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| |||| || |
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|
| T |
52723267 |
cagttagaatttttttacgatgaggcaacagatgggacaaaaagtattagtagtgcaatgtttttgtctctgattggaattggaagttggttaagtactg |
52723366 |
T |
|
| Q |
405 |
ctttggtgaagactgttaccgctgcgaccggaggacaagataaagggtggttaagaaggaaggatcttaatgaaagcaggttggattggttcttctggat |
504 |
Q |
| |
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|||||||||||| | || | ||| || ||||||||||| ||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
52723367 |
ctttggtgaagattattgtagatgcaactggaggacaagagaaagggtggct---aaggaataatcttaatgaaagcaagttggattggttcttctggat |
52723463 |
T |
|
| Q |
505 |
attgacagttctcaatgctgtcaatttct |
533 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
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|
| T |
52723464 |
attgacgattctcaatgctgtcaatttct |
52723492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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