View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_high_1 (Length: 1073)
Name: NF17203_high_1
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 806; Significance: 0; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 806; E-Value: 0
Query Start/End: Original strand, 38 - 904
Target Start/End: Original strand, 28915907 - 28916773
Alignment:
| Q |
38 |
tacgtatatgtatgcatataagaaaggtatgatagctagtaaaagaaggtcactcatgttgaattccttctgtggcaatgtatgacttagttatgtgcaa |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28915907 |
tacgtatatgtatgcatataagaaaggtatgatagctagtaaaagaaggtcactcatgttgaattccttctgtggcaatgtatgacttagttatgtgcaa |
28916006 |
T |
|
| Q |
138 |
tattctttgcctactgatgaaagcttttgatacaatgtacaacttagtcatgtgcaatattattttctacaaattaaagcaaattgcatcaaaattacat |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916007 |
tattctttgcctgctgatgaaagcttttgatacaatgtacgacttagtcatgtgcaatattattttctacaaattaaagcaaattgcatcaaaattacat |
28916106 |
T |
|
| Q |
238 |
gtatgatcgtcttgctagcaaaactaactactgtacttttaataaaaagttgtatgctagattttttcagaccagtaagttttaagcgaagaccaagatt |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916107 |
gtatgatcctcttgctagcaaaactaactactgtacttttaataaaaagttgtatgctagattttttcagaccagtaagttttaagcgaagaccaagatt |
28916206 |
T |
|
| Q |
338 |
acctgttacttctaacagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttgccagcaaaggta |
437 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916207 |
acctgttacttctaaaagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttgccagcaaaggta |
28916306 |
T |
|
| Q |
438 |
tctggttgcttcaaaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttggcagctctttgg |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916307 |
tctggttgcttcaaaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttggcagctctttgg |
28916406 |
T |
|
| Q |
538 |
aacgtacattctgacaagattttatagttgaattcaaatttctgtgcttttgaaatttgaatgcctcattatcatccctttcttccgaactactgatatt |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28916407 |
aacgtacattctgacaagattttatagttgaattcaaatttctgtgctttcgaaatttgaatgcctcattatcatccctttcttctgaactactgatatt |
28916506 |
T |
|
| Q |
638 |
actatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagcttttgtatgctgttcttattaattgttttctgcctcaacaaagttattaaattt |
737 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28916507 |
actatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagcttttgtatgttgttcttattaattgttctctgcctcaacaaagttattaaattt |
28916606 |
T |
|
| Q |
738 |
gcatcacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctt |
837 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916607 |
gcatcgcagattaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctt |
28916706 |
T |
|
| Q |
838 |
tggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916707 |
tggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28916773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 251 - 904
Target Start/End: Original strand, 28925359 - 28925999
Alignment:
| Q |
251 |
gctagcaaaactaactactgtacttttaataaaaagttgtatgctagattttttcagaccagtaagttttaagcgaagaccaagattacctgttacttct |
350 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||| | |||||||||||||||||| ||| |||| |||||||||| ||||| | |||| | |
|
|
| T |
28925359 |
gctagcaaaactaactacttagctgttaataaaaaattgtatggtttattttttcagaccagtaacttt-aagcaaagaccaagagtacctttgacttgt |
28925457 |
T |
|
| Q |
351 |
aacagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttgccagcaaaggtatctggttgcttca |
450 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
28925458 |
acgagcagatgagaattcttttgtaaatagtcatttgggtcggatttgattctaacataacttcccaacactttgccatc---ggtttctggttgcttca |
28925554 |
T |
|
| Q |
451 |
aaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttggcagctctttggaacgtacattctg |
550 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28925555 |
aaagctcctcaattaagctcctcttcaggtagacaagttttatgtttgaactaactatagctgcaaatccacttggcagctctttcgaacgtacattctg |
28925654 |
T |
|
| Q |
551 |
acaagattttatagttgaattcaaatttctgtgcttttgaaatttgaatgcctcattatcatccctttcttccgaactactgatattactatcagtttct |
650 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
|
|
| T |
28925655 |
acaagattttatagttgaattcaaatttctgtgctttcgaaatttgaatgcctcattgtcatccctttcttctgaac---------tactatcagtttct |
28925745 |
T |
|
| Q |
651 |
tcaaaattatctgcaaaatgcgatgcaagaagcttttgtatgctgttcttattaattgtttt---ctgcctcaacaaagttattaaatttgcatcacaga |
747 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||| ||||||| |||| |||||| | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
28925746 |
tcaaaattatctacaaaatgagatgcaagaagcttctgtatgttgttctttttaactgttttccgccgcctcagcaaagtttttaaatttgcatcacaga |
28925845 |
T |
|
| Q |
748 |
ttaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtc |
847 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| ||||||| | || || |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28925846 |
tt---atcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtc |
28925942 |
T |
|
| Q |
848 |
ttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
904 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28925943 |
tctaccaatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
28925999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 326 - 904
Target Start/End: Original strand, 28891826 - 28892407
Alignment:
| Q |
326 |
aagaccaagattacctgttacttctaacagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttg |
425 |
Q |
| |
|
||||| |||||||||| |||||| || |||||||||||||| ||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
28891826 |
aagacaaagattacctattacttgtacgagcagatgagaatttttctgtaaataatcatttcggtcggatttgattctaacaaaacttcccaacactttg |
28891925 |
T |
|
| Q |
426 |
ccagcaaaggtatctggttgcttcaaaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttg |
525 |
Q |
| |
|
|| ||||||| ||||| | ||| |||||||| ||||| ||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
28891926 |
acatcaaaggtttctggcttctttaaaagctcatcaatcaaggtcctccttaagtagacaagttttatgtttgaattaattatagctgcaaatccacttg |
28892025 |
T |
|
| Q |
526 |
gcagctctttggaacgtacattctgacaagattttatagttgaattcaaatttctgtgcttttgaaatttgaatgcctcatt---atcatccctttcttc |
622 |
Q |
| |
|
|| |||||| || ||| ||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||| || |||||||||||| |
|
|
| T |
28892026 |
gctgctcttgagagagtagattctgacaaggttttgtagttgaattcaaatttctctgctttggaaatttgaatgcctcattaccattatccctttcttc |
28892125 |
T |
|
| Q |
623 |
cgaactactgatattactatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagcttttgtatgctgttcttattaattgttttctgcctcaac |
722 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || |||| |||||| |
|
|
| T |
28892126 |
tgaactactgataataccatcagtttcttcaaaattatctacaaaatgcgatgcaagaagcttttgtatgttgttcttattaactgatttccgcctcagt |
28892225 |
T |
|
| Q |
723 |
aaagttattaaatttgcatcacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaa |
822 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
28892226 |
aaagtttctaaatttgcatcacagattaccttcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaa |
28892325 |
T |
|
| Q |
823 |
tttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28892326 |
tttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatc |
28892407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 298 - 904
Target Start/End: Original strand, 28901753 - 28902361
Alignment:
| Q |
298 |
attttttcagaccagtaagttttaagcgaagaccaagattacctgttacttctaacagcagatgagaattcttctgtaaatagtcatttgggtcggattt |
397 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28901753 |
attttttcagaccagtaacttt-aagcgaaaaccaagattacctatgacttgtaagagcagatgagaattcttctgtaaatagtcatttgggtcggattt |
28901851 |
T |
|
| Q |
398 |
ggttctaacataacttcccaacactttgccagcaaaggtatctggttgcttcaaaagctcctcaattaagctcctcttcaagtagacaagttttatgttt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
28901852 |
ggttctaacataacttcccaacactttgccatcaaaggtttctggttgcttcaaaagctcctcaattaagcttctcttcaagtagacaagtttcatgttt |
28901951 |
T |
|
| Q |
498 |
gaactaattattcctgcaaatccacttggcagctctttggaacgtacattctgacaagattttatagttgaattcaaatttctgtgcttttgaaatttga |
597 |
Q |
| |
|
||| ||||||| |||||||| |||||||| |||||| || ||| ||||||||||| |||| |||||||||||||||||| |||||| ||||||||| |
|
|
| T |
28901952 |
gaattaattatagctgcaaatacacttggctgctcttcagagagtatattctgacaaggttttgtagttgaattcaaatttccctgctttggaaatttga |
28902051 |
T |
|
| Q |
598 |
atgcctcatt---atcatccctttcttccgaactactgatattactatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagcttttgtatgct |
694 |
Q |
| |
|
|||| |||| || |||||||||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||| | |
|
|
| T |
28902052 |
atgctccattaccattatccctttcttctgaactagtgataataccatcagtttcctcaaaattatctgcaaaatgcgattcaagaaggttttgaatgtt |
28902151 |
T |
|
| Q |
695 |
gttcttattaattgttttctgcctcaacaaagttattaaatttgcatcacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcag |
794 |
Q |
| |
|
||| ||||| | || | || |||| | ||| || |||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
28902152 |
gtttttattcactgatctccgccttagtaaatttcttaactttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcag |
28902251 |
T |
|
| Q |
795 |
tacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatc |
894 |
Q |
| |
|
|||| ||||||| |||||||||||| ||| || || |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28902252 |
tactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatc |
28902351 |
T |
|
| Q |
895 |
caacaaaatc |
904 |
Q |
| |
|
|||||||||| |
|
|
| T |
28902352 |
caacaaaatc |
28902361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 331 - 901
Target Start/End: Original strand, 28935030 - 28935601
Alignment:
| Q |
331 |
caagattacctgttacttctaacagcagatgagaattcttctgtaaatagtcatttggg-tcggatttggttctaacataacttcccaacactttgccag |
429 |
Q |
| |
|
||||||||||| |||||| || || ||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||| || |
|
|
| T |
28935030 |
caagattacctattacttgtacgagaagatgggaattcttctgtaaatagtcatttggggtcggttttggttctaacaaaacatcccaacactttgtcat |
28935129 |
T |
|
| Q |
430 |
caaaggtatctggttgcttcaaaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttggcag |
529 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||||||| ||||| | |||||||| || |
|
|
| T |
28935130 |
caaaggtttctggttgcttccgaagctcctcgattaaggttctctttaagtagacaagctttaggtttgaactaattatagctgcatagccacttggaag |
28935229 |
T |
|
| Q |
530 |
ctctttggaacgtacattctgacaagattttatagttgaattcaaatttctgtgcttttgaaatttgaatgcctcattatcatccctttcttccgaacta |
629 |
Q |
| |
|
| || ||| | || |||||||||||||| ||| || || |||||||| |||||| ||||||||||||||| ||||||||| ||||||| |||| | |
|
|
| T |
28935230 |
tttttcagaaactgcactctgacaagattttgtagccgagtttaaatttctctgctttggaaatttgaatgccttgttatcatccatttcttctgaacca |
28935329 |
T |
|
| Q |
630 |
ctgatattactatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagcttttgtatgctgttcttattaattgttttctgcctcaacaaagtta |
729 |
Q |
| |
|
| ||| || ||| ||| | |||| ||| ||||||||||| | ||| ||||| |||||||||||||| || || | | |||| || | ||| |
|
|
| T |
28935330 |
cagatcatatcatccgttccctcaacattctctgcaaaatgtggtgccagaaggttttgtatgctgtttttgttcacagatttcctccgtagtaaaaccc |
28935429 |
T |
|
| Q |
730 |
ttaaatttgcatcacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtact-tatggatgatcgaagcaacatcaatttcgg |
828 |
Q |
| |
|
|||| || ||||||||||||||| || ||||||| | | ||||||||| | | ||| || | ||| ||| ||||||||||||||| ||| | |
|
|
| T |
28935430 |
ttaacttagcatcacagattaccttcctctttttctaagagtcaaaaaggttgtttttattgcaataatctat-gattatcgaagcaacatcatgttccg |
28935528 |
T |
|
| Q |
829 |
aaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaa |
901 |
Q |
| |
|
||| ||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28935529 |
taaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaaa |
28935601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 967 - 1073
Target Start/End: Original strand, 28916836 - 28916939
Alignment:
| Q |
967 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttc |
1066 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28916836 |
ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggt---atcttccccctcacctctttc |
28916932 |
T |
|
| Q |
1067 |
atacggt |
1073 |
Q |
| |
|
||||||| |
|
|
| T |
28916933 |
atacggt |
28916939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 971 - 1061
Target Start/End: Original strand, 28902437 - 28902527
Alignment:
| Q |
971 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacct |
1061 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
28902437 |
tttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactcgcatcagattcaccagtatcgtcttccccctcacct |
28902527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 28925106 - 28925203
Alignment:
| Q |
45 |
atgtatgcatataagaaaggtatgatagctagtaaaagaaggtcactcatgttgaattccttctgtggcaatgtatgacttagttatgtgcaatattctt |
144 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||| |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28925106 |
atgtatgcatataagaaaagtatgatagcaaataaaag---gtcactcatgttgacttccttctgcagcaatgtatgacttagtcgtgtgcaatattctt |
28925202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 971 - 1072
Target Start/End: Original strand, 28926072 - 28926173
Alignment:
| Q |
971 |
tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatac |
1070 |
Q |
| |
|
||||||||||||||| || | ||||||||| ||||||| |||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
28926072 |
tttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatac |
28926171 |
T |
|
| Q |
1071 |
gg |
1072 |
Q |
| |
|
|| |
|
|
| T |
28926172 |
gg |
28926173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 28925171 - 28925252
Alignment:
| Q |
170 |
caatgtacaacttagtcatgtgcaatattattttctacaaattaaagcaaattgc-atcaaaattacatgtatgatcgtctt |
250 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
28925171 |
caatgtatgacttagtcgtgtgcaatattcttttgtaccaattaaagcaaattgctatcaaaattacatgtatgatcctctt |
28925252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 28890960 - 28891041
Alignment:
| Q |
22 |
attcctgtgatatggatacgtata----tgtatgcatataagaaaggtatgatagctagtaaaagaaggtcactcatgttga |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||| || ||||||||||| |
|
|
| T |
28890960 |
attcctgtgatatggatacgtataacaatgtatgcatataagaaaagtgtgatagctattaaaagaatgttactcatgttga |
28891041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 28901451 - 28901575
Alignment:
| Q |
22 |
attcctgtgatatggatacgtatat----gtatgcatataagaaaggtatgatagctagtaaaagaaggtcactcatgttgaattccttctgtggcaatg |
117 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||| |||||| | | |||| ||||||||||||||||| || ||||| |||||| |
|
|
| T |
28901451 |
attcctgtgatatggatacatatatcaatgtatgtatataagaaaattatgattg---ggaaaaaaaggtcactcatgttgacctcgttctgcagcaatg |
28901547 |
T |
|
| Q |
118 |
tatgacttagttatgtgcaatattcttt |
145 |
Q |
| |
|
|||||||| || |||||||||||||||| |
|
|
| T |
28901548 |
tatgacttcgtcatgtgcaatattcttt |
28901575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 28934012 - 28934113
Alignment:
| Q |
22 |
attcctgtgatatggatacgtatat----gtatgcatataagaaaggtatgatagctagtaaaagaaggtcactcatgttgaattccttctgtggcaatg |
117 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||| ||||| ||||| ||||||||| |||||| |
|
|
| T |
28934012 |
attcctgtgatatggatacatatatcaatgtatgcatataagaaaagtatgatagctcgtaaaagaacatcactaatgttttcttccttctgcagcaatg |
28934111 |
T |
|
| Q |
118 |
ta |
119 |
Q |
| |
|
|| |
|
|
| T |
28934112 |
ta |
28934113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1003 - 1069
Target Start/End: Original strand, 28892515 - 28892581
Alignment:
| Q |
1003 |
aatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcata |
1069 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28892515 |
aatcagaatctatgaagttactgacatcagactcaccggtatcatcttccccctcacctatttcata |
28892581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 28901543 - 28901624
Alignment:
| Q |
170 |
caatgtacaacttagtcatgtgcaatattattttctacaaattaaagcaaattgc-atcaaaattacatgtatgatcgtctt |
250 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||| |||||||||||||||| |||||||| ||| ||||||| |||| |
|
|
| T |
28901543 |
caatgtatgacttcgtcatgtgcaatattcttttctaccaattaaagcaaattgctatcaaaatgtcatatatgatcctctt |
28901624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 28934191 - 28934263
Alignment:
| Q |
113 |
caatgtatgacttagttatgtgcaatattctttgcctactgatgaaagcttttgatacaatgtacaacttagt |
185 |
Q |
| |
|
|||||||||||||| |||||||||||||| | | ||||| ||||||||||| |||| |||||| ||||||| |
|
|
| T |
28934191 |
caatgtatgacttatttatgtgcaatattttcttcctaccaatgaaagctttggataaaatgtatgacttagt |
28934263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1012 - 1061
Target Start/End: Original strand, 34009511 - 34009560
Alignment:
| Q |
1012 |
ctataaagtcacttgcatcagattcaccggtatcatcttccccctcacct |
1061 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34009511 |
ctataaagtcactcacatcagattcaccagtatcatcttccccctcacct |
34009560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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