View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_high_101 (Length: 243)

Name: NF17203_high_101
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_high_101
NF17203_high_101
[»] chr1 (18 HSPs)
chr1 (1-190)||(36728722-36728911)
chr1 (1-190)||(47140753-47140943)
chr1 (2-190)||(29678289-29678478)
chr1 (9-190)||(48379068-48379248)
chr1 (1-190)||(17562755-17562944)
chr1 (1-190)||(31585202-31585391)
chr1 (37-190)||(11894257-11894410)
chr1 (37-190)||(31292765-31292915)
chr1 (79-190)||(25987355-25987466)
chr1 (6-158)||(19884384-19884536)
chr1 (79-177)||(38264380-38264478)
chr1 (79-171)||(2191843-2191935)
chr1 (83-153)||(25294014-25294084)
chr1 (79-126)||(52252710-52252757)
chr1 (1-62)||(25987458-25987519)
chr1 (1-62)||(2191788-2191851)
chr1 (131-177)||(15378867-15378913)
chr1 (1-62)||(38264327-38264388)
[»] chr6 (13 HSPs)
chr6 (1-190)||(8576717-8576906)
chr6 (1-177)||(10788456-10788632)
chr6 (1-189)||(35167260-35167448)
chr6 (1-190)||(7622331-7622514)
chr6 (1-172)||(28582126-28582296)
chr6 (5-148)||(34433176-34433319)
chr6 (61-158)||(642094-642191)
chr6 (79-187)||(7245534-7245643)
chr6 (9-177)||(10408945-10409112)
chr6 (1-98)||(17930226-17930323)
chr6 (1-49)||(642011-642059)
chr6 (138-190)||(34433713-34433765)
chr6 (36-100)||(5107138-5107202)
[»] chr5 (12 HSPs)
chr5 (1-190)||(3926161-3926350)
chr5 (1-190)||(39207091-39207280)
chr5 (9-190)||(35188575-35188756)
chr5 (1-190)||(23429201-23429390)
chr5 (46-190)||(2209501-2209644)
chr5 (50-153)||(42878917-42879020)
chr5 (79-190)||(33742765-33742878)
chr5 (73-190)||(26621341-26621458)
chr5 (37-158)||(39800427-39800548)
chr5 (117-190)||(42836947-42837020)
chr5 (1-64)||(42837602-42837665)
chr5 (45-153)||(40056971-40057073)
[»] chr2 (9 HSPs)
chr2 (1-190)||(5110175-5110364)
chr2 (1-190)||(5704570-5704759)
chr2 (1-190)||(13807512-13807701)
chr2 (4-190)||(31575918-31576104)
chr2 (1-190)||(5938695-5938884)
chr2 (14-190)||(45151225-45151401)
chr2 (1-129)||(13626287-13626416)
chr2 (56-190)||(45458419-45458554)
chr2 (37-153)||(42625039-42625155)
[»] chr8 (10 HSPs)
chr8 (1-190)||(8227218-8227407)
chr8 (1-190)||(9762901-9763090)
chr8 (1-190)||(13355770-13355959)
chr8 (3-190)||(7968407-7968596)
chr8 (1-168)||(11481406-11481573)
chr8 (40-190)||(36582901-36583051)
chr8 (1-172)||(6870603-6870774)
chr8 (1-190)||(31005972-31006163)
chr8 (1-107)||(7987177-7987282)
chr8 (37-96)||(7987283-7987342)
[»] chr3 (16 HSPs)
chr3 (1-190)||(5295175-5295364)
chr3 (1-190)||(21288064-21288252)
chr3 (1-190)||(25874678-25874867)
chr3 (3-158)||(3778883-3779038)
chr3 (1-190)||(27926606-27926784)
chr3 (1-190)||(13825875-13826064)
chr3 (79-172)||(48251717-48251810)
chr3 (37-158)||(12149017-12149138)
chr3 (74-190)||(26187889-26188005)
chr3 (1-100)||(32847582-32847681)
chr3 (79-145)||(36584410-36584476)
chr3 (1-71)||(48251487-48251557)
chr3 (81-122)||(13084754-13084795)
chr3 (37-116)||(37341419-37341498)
chr3 (1-62)||(36584468-36584529)
chr3 (6-97)||(32836738-32836829)
[»] chr4 (15 HSPs)
chr4 (1-190)||(38951589-38951778)
chr4 (9-190)||(41039302-41039482)
chr4 (1-190)||(22278281-22278470)
chr4 (1-190)||(8819285-8819474)
chr4 (1-190)||(40714825-40715014)
chr4 (1-190)||(42555280-42555469)
chr4 (1-190)||(51357137-51357325)
chr4 (1-185)||(23626815-23626996)
chr4 (22-190)||(29116989-29117157)
chr4 (3-176)||(43624395-43624570)
chr4 (5-190)||(19841709-19841882)
chr4 (79-190)||(17120334-17120445)
chr4 (1-190)||(36464804-36464986)
chr4 (1-62)||(17120281-17120342)
chr4 (79-146)||(40571958-40572026)
[»] chr7 (21 HSPs)
chr7 (1-185)||(23809649-23809833)
chr7 (1-190)||(5972929-5973117)
chr7 (5-185)||(2944053-2944233)
chr7 (1-190)||(11039160-11039350)
chr7 (1-172)||(36298760-36298931)
chr7 (1-151)||(28636373-28636523)
chr7 (6-190)||(30541465-30541649)
chr7 (3-190)||(7767031-7767218)
chr7 (1-190)||(25502108-25502287)
chr7 (1-185)||(31457228-31457420)
chr7 (17-190)||(38440431-38440604)
chr7 (3-187)||(33189362-33189542)
chr7 (1-158)||(22519173-22519329)
chr7 (79-190)||(15954686-15954797)
chr7 (36-158)||(1053127-1053249)
chr7 (102-190)||(40910567-40910655)
chr7 (80-190)||(47924937-47925054)
chr7 (37-153)||(27336930-27337046)
chr7 (80-158)||(31758962-31759041)
chr7 (5-69)||(15954066-15954130)
chr7 (1-105)||(14753979-14754083)
[»] scaffold0155 (1 HSPs)
scaffold0155 (4-186)||(6865-7047)
[»] scaffold0041 (1 HSPs)
scaffold0041 (102-190)||(62439-62527)
[»] scaffold0115 (1 HSPs)
scaffold0115 (37-153)||(22052-22168)
[»] scaffold0057 (2 HSPs)
scaffold0057 (79-118)||(66580-66619)
scaffold0057 (1-62)||(66611-66672)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 36728722 - 36728911
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||  ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36728722 tttgtttttgttgaatatgatgaactttacatgtgtttttgttaaatcaaataactttatttttcttaaatgtaagagactttatttatgtttttgttga 36728821  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  36728822 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacatttgtttctaaa 36728911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 47140943 - 47140753
Alignment:
Q  1 tttgtttttgttgaatatgatg-agttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 99  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  47140943 tttgtttttgttgaatatgatggagttttacttatgcttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttg 47140844  T
Q  100 agtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||| ||||||||| ||||||||| || ||||||||||||||||||| |||||  ||||||||||||||||| ||||||||||||    
T  47140843 agtcaatgatttttgttgttgttgtaatgtatgtatattatgttttgctaaaatgaaaagaaaatgcatgtgaagaacctttgtttctaaa 47140753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 29678289 - 29678478
Alignment:
Q  2 ttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgag 101  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||| |||| || |||||||||| ||||||||||    
T  29678289 ttgtttttgttgaatatgatgagctttacttatacttttgttaaatcaaagaactttatttttattaaatgtaagggaatttatttatgattttgttgag 29678388  T
Q  102 tcaatgatctttgttgttattgtaatgtgtggatattatg-ttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||||||||||||||| || ||| |||| |||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  29678389 tcaatgatctttgttgttattgtaatgtatgaataatatgtttttactaaaaagaaaagaaaatgcatgtgaagaacttttgtttctaaa 29678478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 48379068 - 48379248
Alignment:
Q  9 tgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatga 108  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  48379068 tgttgaatatgatg-gttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatga 48379166  T
Q  109 tctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||||||  |||| ||| |||||||| ||||||||||||    
T  48379167 tctttgttgttattgtaatgtatgactatgatgttttgctaaaaagaaaagaaaatacatatgaagaacctttgtttctaaa 48379248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 17562755 - 17562944
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| |||||  |  | |||||||||| |||||||||||     
T  17562755 tttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaacgtcggggactttatttctgtttttgttgg 17562854  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||| |   ||||||||||||    
T  17562855 gtcaatgatctttgttgttattgtaatgtatgtatattatgttttgctaaaaagaaaagaaaatgcatgtgaatactctttgtttctaaa 17562944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 31585202 - 31585391
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||| ||| |||||||||||| |||||  |  | ||||||||||||||||||||||     
T  31585202 tttgtttttgttgaatatgatgagctttacttatgtttttgttaaattaaataactttatttttattaaacgtcggggactttatttatgtttttgttgg 31585301  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||| |   ||||||||||||    
T  31585302 gtcaatgatctttgttgttattgtaatgtatgtatattatgttttgctaaaaagaaaagaaaatgcatgtgaatactctttgtttctaaa 31585391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 11894410 - 11894257
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 136  Q
    ||||||||||||||| |||||||||||| |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| || |||    
T  11894410 ttttgttaaatcaaataactttatttttattaaatgtaagcaactttatttatgtttttgttgagtcaatgatctttgttgttattataatgtatgaata 11894311  T
Q  137 ttatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||| |||||||||||  |||||||| |||||||| ||||| ||||||    
T  11894310 ttatgttttgttaaaaagaaaagaaaatgcatatgaagaacctttgtctctaaa 11894257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 31292765 - 31292915
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 136  Q
    ||||||||||||||| |||||||||||| ||| || |||| ||||||||||||||||||| |||||||||||||   ||||||||| |||||| || |||    
T  31292765 ttttgttaaatcaaataactttatttttgttacatgtaagggactttatttatgtttttgctgagtcaatgatc---gttgttattataatgtatgaata 31292861  T
Q  137 ttatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||    
T  31292862 ttatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttttaaa 31292915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 25987466 - 25987355
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaaca 178  Q
    |||||||||||||||||||||||| |||||||||| |||||||| |||||| || |||||||||||||||||||||||||  |||||||||||||||||     
T  25987466 actttatttatgtttttgttgagttaatgatcttttttgttattttaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacc 25987367  T
Q  179 tttgtttctaaa 190  Q
    ||||||||||||    
T  25987366 tttgtttctaaa 25987355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 19884384 - 19884536
Alignment:
Q  6 ttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaa 105  Q
    ||||||||||||||||||| | || || | ||||||| |||||||||||  |||||| | |||||  ||||  | ||||||||| |||||||||||||||    
T  19884384 ttttgttgaatatgatgagctatatttatacttttgtcaaatcaaagaatattatttgtattaaaagtaaggaattttatttatatttttgttgagtcaa 19884483  T
Q  106 tgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 158  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  19884484 tgatctttgttattattgtaatgtatgaatattatgttttgctaaaaagaaaa 19884536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 38264380 - 38264478
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaac 177  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |  |||||||||||| ||||    
T  38264380 actttatttatatttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataatagaaaatgcatgtgatgaac 38264478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 2191843 - 2191935
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtg 171  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||| ||||||||||||  |||||||||||    
T  2191843 actttatttatgtttttgttgagtcaatgatttttgttgttattgtaatgtagtgatattatgttttactaaaaagaaaagaaaatgcatgtg 2191935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 25294014 - 25294084
Alignment:
Q  83 tatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaa 153  Q
    ||||||||||||| ||||||||| ||||||||||||| || |||| | | |||||||||||||||||||||    
T  25294014 tatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgatattatgttttgctaaaaa 25294084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 52252757 - 52252710
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaa 126  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  52252757 actttatttatgtttttattgagtcaaagatctttgttgttattgtaa 52252710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25987519 - 25987458
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 62  Q
    |||||||||||||||||||| ||| ||||||| || |||||||| ||| |||||||||||||    
T  25987519 tttgtttttgttgaatatgacgagctttacttatgtttttgttatatctaagaactttattt 25987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2191788 - 2191851
Alignment:
Q  1 tttgtttttgttgaatatgatgag--ttttacttgtgcttttgttaaatcaaagaactttattt 62  Q
    ||||||||||||||||||||||||  ||||| || | ||||||| |||||||||||||||||||    
T  2191788 tttgtttttgttgaatatgatgagagttttatttatacttttgtcaaatcaaagaactttattt 2191851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 15378913 - 15378867
Alignment:
Q  131 tggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaac 177  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||    
T  15378913 tggatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaac 15378867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38264327 - 38264388
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 62  Q
    ||||||||  ||||||||||| |  |||| || ||||||||| |||||||||||||||||||    
T  38264327 tttgttttaattgaatatgataatctttatttatgcttttgtcaaatcaaagaactttattt 38264388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 8576906 - 8576717
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||||    
T  8576906 tttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaattgaagagactttatttatgtttttgttga 8576807  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  8576806 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 8576717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 10788632 - 10788456
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||    
T  10788632 tttgtttttgttgaatatgatgaactttacttatgcttttgttaaatcaaagaaatttatttttattatatgtaagagactttatttatgtttttgttga 10788533  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaac 177  Q
     |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||  |||||||||||||||||    
T  10788532 ctcaatgatctttgttgttattgtaatgtatgaatattctgttttgctaaaaagaaaagaaaatgcatgtgaagaac 10788456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 35167260 - 35167448
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||| ||| |||||||| |||||| | |||||||||||||||||||||||| |    
T  35167260 tttgtttttgttgaatatgatgacttttacttgaacttttgttaaatcaaataacattatttttattaaatgtgagagactttatttatgtttttgttaa 35167359  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaa 189  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||| ||| |||| |||||||||||    
T  35167360 gtcaatgatctttgttgttattgtaatgtacggatattatgttttgctaaaaagaaaagaaaatgcatatgatgaacctttgtttctaa 35167448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7622514 - 7622331
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| |||| || || |||||||||||||||||||||||| ||| |||||| |||  ||| |||||||||||||||||||    
T  7622514 tttgtttttgttgaatatgatgagattta-ttatgtttttgttaaatcaaagaactttatctttattaaatgtaaaggacattatttatgtttttgttga 7622416  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||     ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||||||    
T  7622415 gtcaatgatcttt-----tattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctctgtttctaaa 7622331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 28582296 - 28582126
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||| |||||||||||||||||  |||| || || |||||||||||||||||| ||||| ||| |||||| |||||  |||||||||||||||| | ||    
T  28582296 tttgtatttgttgaatatgatgaactttatttatgtttttgttaaatcaaagaaatttatatttattaaatgtaagaagctttatttatgtttttatcga 28582197  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 172  Q
    ||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||  ||||||||||||    
T  28582196 gtcaatgatttttgttgctattttaat-tatggatattatgttttgctaaaaagaaaagaaaatgcatgtga 28582126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 34433176 - 34433319
Alignment:
Q  5 tttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtca 104  Q
    ||||| || |||||||||||||||||||    ||||||||||| ||| |||||||||| | |||||| ||||||||||||||||  |||||||| |||||    
T  34433176 tttttttttaatatgatgagttttacttaaatttttgttaaattaaataactttatttgtattaaatgtaagagactttatttacatttttgttaagtca 34433275  T
Q  105 atgatctttgttgttattgtaatgtgtggatattatgttttgct 148  Q
    ||||||||||||||||||||||||| | ||||||||||||||||    
T  34433276 atgatctttgttgttattgtaatgtatagatattatgttttgct 34433319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 642094 - 642191
Alignment:
Q  61 ttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 158  Q
    |||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  642094 ttttattaaatgtaaaagactttatttatgtttttgttaagtcaatgatctttgttgttattgtaatgtatgaatattttgttttgctaaaaagaaaa 642191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 7245534 - 7245643
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgct-aaaaagaaaaacaaatgcatgtgaagaac 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||| ||||| |||||  ||||||||||    
T  7245534 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttactaaaaaaaaaaaaaaaatgtttgtgaagaac 7245633  T
Q  178 atttgtttct 187  Q
     |||||||||    
T  7245634 ctttgtttct 7245643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 10408945 - 10409112
Alignment:
Q  9 tgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatga 108  Q
    |||| ||||||||||  |||| || | |||| |||||||||||||| ||||  | | | |||| ||||   ||||| ||||||||||||| |||||||||    
T  10408945 tgttaaatatgatgaactttatttatactttagttaaatcaaagaagtttaaatatatcaaatgtaaggagctttagttatgtttttgttaagtcaatga 10409044  T
Q  109 tctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaac 177  Q
    ||| |||||||||| |||||  || ||||||| |||||||||||||||||| |||||||||||| ||||    
T  10409045 tctatgttgttattataatgcatgaatattatattttgctaaaaagaaaaa-aaatgcatgtgatgaac 10409112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 17930226 - 17930323
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgtt 98  Q
    |||||||||||||||||||||||  |||| || || ||||||| |||||||||||||| |||||||||||| | |   ||||||||||| ||||||||    
T  17930226 tttgtttttgttgaatatgatgaactttatttatgtttttgttgaatcaaagaactttgtttttcttaaatgtcatgaactttatttatatttttgtt 17930323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 642011 - 642059
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatca 49  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  642011 tttgtttttgttgaatatgatgagttttacttaagcttttgttaaatca 642059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 34433713 - 34433765
Alignment:
Q  138 tatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||||||||  ||| |||| ||| |||||||||||||||||    
T  34433713 tatgttttgctaaaaagaaaagaaaacgcatatgatgaacatttgtttctaaa 34433765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 5107202 - 5107138
Alignment:
Q  36 cttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||| |||||| ||||||| ||||| |||||||| |   |||| |||||||||||||||||    
T  5107202 cttttgttgaatcaaggaactttgtttttgttaaatatgatgaacttgatttatgtttttgttga 5107138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 3926350 - 3926161
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||  ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  3926350 tttgtttacgttgaatatgatgagctttactcatgcttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttga 3926251  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  3926250 gtcaatgatttttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 3926161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 39207091 - 39207280
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||     
T  39207091 tttgtttttgttgaatatgatgagttgtacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgttgt 39207190  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  || |||||||||||||| ||||||||||||    
T  39207191 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaattgcatgtgaagaacctttgtttctaaa 39207280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 35188575 - 35188756
Alignment:
Q  9 tgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatga 108  Q
    |||||||||| ||||| ||||||| || ||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||    
T  35188575 tgttgaatataatgagctttacttatgattttgttaaatcaaataactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatga 35188674  T
Q  109 tctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||  |||| |||||||| ||| ||||||||||||    
T  35188675 tctttgttgttattgtaatttatgaatattatgttttgctaaaaagaaaagaaaatacatgtgaataacctttgtttctaaa 35188756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 23429390 - 23429201
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||  |||||||||| ||||||||||||  | ||||||||||||||| |||||||||||| |||||| |||  |||||||||||||||||||||||    
T  23429390 tttgtttacgttgaatatggtgagttttacttacgtttttgttaaatcaaataactttatttttattaaatgtaacggactttatttatgtttttgttga 23429291  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    || ||||||||||||||||||||| || | || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  23429290 gtaaatgatctttgttgttattgtgatatatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 23429201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 2209644 - 2209501
Alignment:
Q  46 atcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgtttt 145  Q
    ||||||||||||||||||| |||||||||||  || ||| ||||||||||||||||||||||||||||| ||||||| | ||||  ||||||||||||||    
T  2209644 atcaaagaactttatttttattaaatataaggaacgttaattatgtttttgttgagtcaatgatctttg-tgttattatgatgtacggatattatgtttt 2209546  T
Q  146 gctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||  |||||||||||| |||| ||||||| ||||    
T  2209545 gctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaa 2209501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 42878917 - 42879020
Alignment:
Q  50 aagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgcta 149  Q
    ||||||||||||||| |||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||  ||||||||    
T  42878917 aagaactttatttttattaagtgtaagggactttatttatgtttttgttgagttaatgatctttgttgttattgtaatgtatgaatattacattttgcta 42879016  T
Q  150 aaaa 153  Q
    ||||    
T  42879017 aaaa 42879020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 33742765 - 33742878
Alignment:
Q  79 actttatttat-gtttttgttgagtcaatgat-ctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaa 176  Q
    ||||||||||| |||||| ||||||||||||| |||| ||||||||||||||| || ||||||||||||| |||||||||||  ||||||||||||||||    
T  33742765 actttatttattgtttttattgagtcaatgattctttattgttattgtaatgtatgaatattatgttttgttaaaaagaaaagaaaatgcatgtgaagaa 33742864  T
Q  177 catttgtttctaaa 190  Q
    | ||||||||||||    
T  33742865 cctttgtttctaaa 33742878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 26621458 - 26621341
Alignment:
Q  73 taagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 172  Q
    ||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||| || |||||||| ||||| ||||||||||  ||||  ||||||    
T  26621458 taagaaactttatttatgtttttgttgagtcaataattttttttgttattgtaatgtatgaatattatgctttgcaaaaaagaaaagaaaatatatgtga 26621359  T
Q  173 agaacatttgtttctaaa 190  Q
     |||| ||||||| ||||    
T  26621358 tgaacttttgtttttaaa 26621341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 39800427 - 39800548
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 136  Q
    ||||||| |||||||||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||| ||||||||||||| || |||| | | ||||    
T  39800427 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 39800526  T
Q  137 ttatgttttgctaaaaagaaaa 158  Q
    ||||||||||||||||| ||||    
T  39800527 ttatgttttgctaaaaaaaaaa 39800548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 42837020 - 42836947
Alignment:
Q  117 gttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  42837020 gttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 42836947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42837665 - 42837602
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattttt 64  Q
    ||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||    
T  42837665 tttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttattttt 42837602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 40057073 - 40056971
Alignment:
Q  45 aatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttt 144  Q
    |||||||||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||| ||| ||||||||| || |||      ||||||||||||    
T  40057073 aatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatttttgttgttgttataa------gatattatgttt 40056980  T
Q  145 tgctaaaaa 153  Q
    |||||||||    
T  40056979 tgctaaaaa 40056971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 5110364 - 5110175
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||| |||||| |||| ||| |||||||||||||||||||    
T  5110364 tttgtttttgttgaatatgatgagttttacttatatttttgttaaatcaaataactttatttttattaaatgtaagggacattatttatgtttttgttga 5110265  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  5110264 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 5110175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 5704759 - 5704570
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| |||||| |||| |||||||||||| ||||||||||    
T  5704759 tttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagtgactttatttatatttttgttga 5704660  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||    
T  5704659 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtgaagaacctttgtttctaaa 5704570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 13807701 - 13807512
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||| |||||||||||||||  ||||||| || ||||| |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  13807701 tttgtttatgttgaatatgatgaactttacttatgtttttgctaaatcaaagaactttatttttattgaatgtaagagactttatttatgtttttgttga 13807602  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||||    
T  13807601 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaacagaaaagaaaatgcatgtgaagaacctttgtttctaaa 13807512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 31575918 - 31576104
Alignment:
Q  4 gtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtc 103  Q
    |||| |||||||||||||||  ||||||| || ||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  31575918 gtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaaaaactttatttttattaaatgtaagggactttatttatgtttttgttgagtc 31576017  T
Q  104 aatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||| |||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  31576018 aatgatctttgttattattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 31576104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 5938884 - 5938695
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||  ||||||| |  ||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||    
T  5938884 tttgtttttgttgaatatgatgaactttacttatatttttgttaaatcaaataactttatttttattaaatgtaagggactttatttatgtttttgttga 5938785  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||  |||||||||||||||||  |||||||||||    
T  5938784 gtcaatgatctttgttgttattgtaatgtatgaatactatgttttgctaaaaagaaaagaaaatgcatgtgaagaaccattgtttctaaa 5938695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 45151225 - 45151401
Alignment:
Q  14 aatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatcttt 113  Q
    ||||||||||| ||||||| |  |||||||||||||||||| ||||||||| |||||| |||| |||||| |||||||||||||||| ||||||||||||    
T  45151225 aatatgatgagctttacttatatttttgttaaatcaaagaattttatttttattaaatgtaagggactttgtttatgtttttgttgaatcaatgatcttt 45151324  T
Q  114 gttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  45151325 gttgttattgtaatgtatgaatattatgttttgctaaaaagaaaaaaaaatgcatgtgaagaacctttgtctctaaa 45151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 13626287 - 13626416
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgctttt-gttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttg 99  Q
    ||||||||||| |||||||||||  ||||||| || |||| |||||||| ||||||||||||||| |||||| | || ||||||||||||||||||||||    
T  13626287 tttgtttttgtcgaatatgatgaactttacttatgttttttgttaaatcgaagaactttatttttattaaatgttagggactttatttatgtttttgttg 13626386  T
Q  100 agtcaatgatctttgttgttattgtaatgt 129  Q
    ||||||||||||||| ||||||||||||||    
T  13626387 agtcaatgatctttggtgttattgtaatgt 13626416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 45458419 - 45458554
Alignment:
Q  56 tttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttt-tgctaaaaag 154  Q
    ||||||||| ||||| | || | |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |  ||||||     
T  45458419 tttatttttattaaacaaaacaaactttatttatgtttttgttgaatcaatgatctttgttgttatggtaatgtatggatattatgtttctcttaaaaaa 45458518  T
Q  155 aaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||| |||  ||||||| |||| ||||||| ||||    
T  45458519 aaaaaaaaagacatgtgatgaacttttgtttttaaa 45458554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 42625039 - 42625155
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 136  Q
    ||||||| |||||||||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||| ||||||||||||| || |||| | | ||||    
T  42625039 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 42625138  T
Q  137 ttatgttttgctaaaaa 153  Q
    |||||||||||||||||    
T  42625139 ttatgttttgctaaaaa 42625155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 8227218 - 8227407
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |    
T  8227218 tttgtttatgttgaatatgatgagttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgttta 8227317  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||  ||||||  |||||| |||||||||| ||||||||||||    
T  8227318 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaagtagaaaagaaaatgcgtgtgaagaacttttgtttctaaa 8227407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 9762901 - 9763090
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||| |||||||||||||||  ||||||| || ||||||||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||    
T  9762901 tttgtttatgttgaatatgatgaactttacttatgtttttgttaaattaaagaactttatttttattaaatgtaagggactttatttatgtttttgttga 9763000  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||    
T  9763001 gtcaatgatttttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtgaagaacctttgtttctaaa 9763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 13355959 - 13355770
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||| |    
T  13355959 tttgtttttgttgaataggatgagttttacttaagcttttgttaaatcaaataactttatttttattaaatgtatgagactttatttatgtttttgttaa 13355860  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||  |||||||| ||| |||| ||||||||||||    
T  13355859 gtcaatgatctttgttgttgttctaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatatgatgaacctttgtttctaaa 13355770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 7968407 - 7968596
Alignment:
Q  3 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagt 102  Q
    ||||||||||||||| |||||  ||||| | |||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||     
T  7968407 tgtttttgttgaataagatgaactttacctatgcttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttgtttagc 7968506  T
Q  103 caatgatctttgttgttattgtaatgtgtggatattatgttttgct--aaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||  ||||| ||||||||||| ||||||||||||    
T  7968507 caatgatctttgttgttattgtaatgtatggatattatgttttgctaaaaaaagaaaagtaaatggatgtgaagaacctttgtttctaaa 7968596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 11481573 - 11481406
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||| |||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||    
T  11481573 tttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggagtttatttatgtttttgttga 11481474  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcat 168  Q
    ||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  11481473 gtcaatgatttttgctattattgtaatgtgtgaatattatgttttgctaaaaagaaaagaaaatgcat 11481406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 36582901 - 36583051
Alignment:
Q  40 tgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatatta 139  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  36582901 tgttaaatcaaagaactttatttttaataaatgtaagacactttatttatgtttttgtggagtcaatgatctttgttgttattgtaatgtatgaatatta 36583000  T
Q  140 tgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||||||  ||||||||||||||||| ||| ||||||||    
T  36583001 tgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttatttctaaa 36583051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 6870603 - 6870774
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||||| ||| |||||||| |||||| ||||  ||||||||||| ||||||||      
T  6870603 tttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatatttttgtttg 6870702  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 172  Q
    |||||||||||||||||| |||||||||| || ||||||||||| ||||| ||||||   ||||||||||||    
T  6870703 gtcaatgatctttgttgtaattgtaatgtatgaatattatgtttcgctaataagaaacgaaaatgcatgtga 6870774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 31006163 - 31005972
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||||||||||||||| |  |||| || ||||||| | |||||||| ||||||||||||  ||||   |||  |||||| |||| ||||||||||    
T  31006163 tttgtttttgttgaatatgataatctttatttatgcttttatcaaatcaaataactttatttttagtaaacggaaggaactttacttatatttttgttga 31006064  T
Q  101 gtcaatgatc--tttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||   ||| ||||||| |||||||||| ||||||||||||||||||||||| |  |||||||||| | |||| ||||||| ||||    
T  31006063 gtcaatgattatttttttgttatcgtaatgtgtgaatattatgttttgctaaaaagaatagaaaatgcatgtaatgaacttttgtttttaaa 31005972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 7987177 - 7987282
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||||||||||| |||||  |||||   |||||||||||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  7987177 tttgtttttgttgaataagatgaactttacccatgcttttgttaaatgaaagaactttatttttatt-aatgtaagagactttatttatgtttttgttga 7987275  T
Q  101 gtcaatg 107  Q
    | |||||    
T  7987276 gccaatg 7987282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 7987283 - 7987342
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttg 96  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7987283 ttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttg 7987342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 5295364 - 5295175
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| |||| || || ||||||||||||||| |||||||||||  |||||| |||| |||||||||||||||||||||||    
T  5295364 tttgtttttgttgaatatgatgagctttagttatgtttttgttaaatcaaataactttattttaattaaatgtaagggactttatttatgtttttgttga 5295265  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  5295264 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgtatgtgaagaacttttgtttctaaa 5295175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 21288252 - 21288064
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  21288252 tttgtttttgttgaatatgatga-ttttacttatgattttgttaaatcaaagaactttattttaattaaatgtaagagactttatttatgtttttgttga 21288154  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||| |||||| |||||||| || ||||||||||| |||||| ||||||  ||||||||||||||||| ||||||||||||    
T  21288153 gtcaatgatctttattgttagtgtaatgtatgaatattatgtttcgctaaagagaaaagaaaatgcatgtgaagaacctttgtttctaaa 21288064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 25874678 - 25874867
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||    
T  25874678 tttgttttt-ttgaatatgatgagttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagtgacattatttatgtttttattga 25874776  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatg-ttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||| |||||||||||||||||||||||| || |||||||| ||||| |||||||||||  ||||||||||||||||| ||||||||||||    
T  25874777 gtcattgatctttgttgttattgtaatgtatgaatattatgtttttgttaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 25874867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 3778883 - 3779038
Alignment:
Q  3 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagt 102  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3778883 tgtttttgttgaatatgatgagctttacttatgctttttttaaatcaaataactttatttttattaaatataagggactttatttatgtttttgttgagt 3778982  T
Q  103 caatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 158  Q
    |||||||||||||| |||||||| ||| || |||||||||||||||||||||||||    
T  3778983 caatgatctttgttattattgtagtgtatgaatattatgttttgctaaaaagaaaa 3779038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 27926606 - 27926784
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||          || |||||||||||||||||||||| |||||    
T  27926606 tttgtttttgttgaatataatgagttttacctatgtttttgttaaatcaaagaacttta----------atgtaagagactttatttatgtttt-gttga 27926694  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  27926695 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 27926784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 13826064 - 13825875
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||| |||||||||||||||| || ||| |||| ||| |||||||| |||||||| |    
T  13826064 tttgtttttgttgaatatgatgaactttacttatgcttttgttaaattaaagaactttatttttatttaatgtaagtgacattatttatatttttgttaa 13825965  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||| |||||||||||||||||||||||| || |||||||||||| ||||||| ||||  |||||||| | |||||| ||||||||||||    
T  13825964 gtcagtgatctttgttgttattgtaatgtatgaatattatgttttactaaaaataaaagaaaatgcatatcaagaacctttgtttctaaa 13825875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 48251717 - 48251810
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 172  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  48251717 actttatttatgtttttgttgaatcaatgatctttgttgttattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatgtga 48251810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 12149138 - 12149017
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 136  Q
    ||||||| |||||| ||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||||||||||||||||| || |||| | | ||||    
T  12149138 ttttgtttaatcaatgaattttatttctgttaaatgtagtgaactttatttatgtttttattgagtcaatgatctttgttgttgttataatctatcgata 12149039  T
Q  137 ttatgttttgctaaaaagaaaa 158  Q
    |||||||||| |||||| ||||    
T  12149038 ttatgttttgataaaaaaaaaa 12149017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 26188005 - 26187889
Alignment:
Q  74 aagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaa 173  Q
    |||| |||||| ||||||||||||||||  |||||||||| ||||||||| ||||| || ||||||| |||||| |||||||| |  ||||||||||||     
T  26188005 aagaaactttaattatgtttttgttgaggtaatgatctttattgttattgcaatgtatgaatattatattttgcgaaaaagaatagaaaatgcatgtgat 26187906  T
Q  174 gaacatttgtttctaaa 190  Q
    |||  ||||||| ||||    
T  26187905 gaatttttgtttttaaa 26187889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32847681 - 32847582
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||||| ||||||||||| ||||| || || ||||||| |||||||||||||| ||||| |||||| | |   ||||||||||||||||||||||    
T  32847681 tttgtttttgtggaatatgatgaattttatttatgtttttgttgaatcaaagaactttgtttttgttaaatgttatgaactttatttatgtttttgttga 32847582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 36584476 - 36584410
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgtttt 145  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||||| || ||||||| ||||    
T  36584476 actttatttatgtttttcttgaatcaatgatctttgttgttattataatgtatgaatattatatttt 36584410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 48251487 - 48251557
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaat 71  Q
    |||||||||||||||||||||||| |||| || |||||||||||| | |||||||||||| ||| ||||||    
T  48251487 tttgtttttgttgaatatgatgagctttatttatgcttttgttaacttaaagaactttatatttattaaat 48251557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 13084754 - 13084795
Alignment:
Q  81 tttatttatgtttttgttgagtcaatgatctttgttgttatt 122  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  13084754 tttatttatgtttttgttgagtcattgatctttgttgttatt 13084795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 37341419 - 37341498
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgtt 116  Q
    ||||||| |||||| ||||||||||||| |||||| | | | ||||||||||||||||| |||| |||| || |||||||    
T  37341419 ttttgttgaatcaaggaactttatttttgttaaatgtgataaactttatttatgttttttttgaatcaaggaactttgtt 37341498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36584529 - 36584468
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 62  Q
    |||||||||||||||||||||||  |||| || |  |||||| |||||||||||||||||||    
T  36584529 tttgtttttgttgaatatgatgaactttatttatatttttgtcaaatcaaagaactttattt 36584468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 32836829 - 32836738
Alignment:
Q  6 ttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgt 97  Q
    ||||||||||||||||||  |||| || ||||||| || |||||| ||||||| ||||| |||||| | |   ||| |||||||||||||||    
T  32836829 ttttgttgaatatgatgaactttatttatgctttttttcaatcaaggaactttgtttttattaaatgtcatgaactgtatttatgtttttgt 32836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 38951778 - 38951589
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||    ||| |||| |||||||| ||||| ||||||||    
T  38951778 tttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttatttttagctaatgtaagggactttatatatgtgtttgttga 38951679  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||    
T  38951678 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgttaaaaagaaaagaaaatgcatgtgaagaacctttgtttctaaa 38951589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 41039482 - 41039302
Alignment:
Q  9 tgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatga 108  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  41039482 tgttgaatatgatg-gttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatga 41039384  T
Q  109 tctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||||||  |||| ||| |||||||| ||||||||||||    
T  41039383 tctttgttgttattgtaatgtatgactatgatgttttgctaaaaagaaaagaaaatacatatgaagaacctttgtttctaaa 41039302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 22278470 - 22278281
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||  ||||| ||||  ||||||| || |||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||| |    
T  22278470 tttgtttttgtcaaatattatgaactttacttatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttatttatgtttttgttaa 22278371  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||||||||||  || |||  ||||||||||||||||| ||||||||||  |||||||||| |||||||||||||||||||    
T  22278370 gtcaatgatctttgttgttaccgtgatgcatggatattatgttttgccaaaaagaaaagaaaatgcatgttaagaacatttgtttctaaa 22278281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 8819285 - 8819474
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||| ||||| |||| || | ||||||| |||||||| ||||||| |||| |||||| ||||  ||||||||||||||||||||||    
T  8819285 tttgtttttgttgaatattatgagctttatttatacttttgtcaaatcaaataactttacttttattaaatgtaaggaactttatttatgtttttgttga 8819384  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
     ||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||  |||||||||||| |||| || |||| ||||    
T  8819385 atcaatgatctttgttgttattataatgtatagatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaa 8819474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 40714825 - 40715014
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| |||| |  || |||||||||||||||||||||||||||| |||||  ||||  || |||||||||||||||||||    
T  40714825 tttgtttttgttgaatatgatgagctttattaatgtttttgttaaatcaaagaactttatttttattaaaagtaaggaacattatttatgtttttgttga 40714924  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||  |||||||||||| | |||||||| |||||||||||| ||||  |||||||||||| |||| ||||||| ||||    
T  40714925 gtcaatgatctttgtctttattgtaatgtattgatattatattttgctaaaaacaaaagaaaatgcatgtgatgaacttttgtttttaaa 40715014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 42555469 - 42555280
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||| |||||||||||||||| |||||| ||||   |||||||||||||||||||||    
T  42555469 tttgtttttgttgaatatgataacctttatttatgcttttgttaaattaaagaactttatttttattaaatgtaaggatctttatttatgtttttgttga 42555370  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||| |||||||||||||||||||| || |||||||| ||| ||||||||||||  |||||||||| | |||| ||||||| ||||    
T  42555369 gtcaatgaactttgttgttattgtaatgtatgtatattatgcttttctaaaaagaaaagaaaatgcatgttatgaacttttgtttttaaa 42555280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 51357325 - 51357137
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| |||| || | ||||||| | |||||| |||||||||||| |||||| ||||  |||| |||||||||| ||||||    
T  51357325 tttgtttttgttgaatatgatgagctttatttatacttttgtcatatcaaataactttatttttattaaatgtaaggaactt-atttatgtttctgttga 51357227  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| |||| || |||| ||||    
T  51357226 gtcaataatctttgttgttattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaa 51357137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 23626996 - 23626815
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||| ||||||||||| ||||  | ||||||||||||||||||||||||||| |||    ||| ||||  || |||||||||||||||||||    
T  23626996 tttgtttttgttaaatatgatgagctttatatatgcttttgttaaatcaaagaactttatatttg---aatgtaaggaaccttatttatgtttttgttga 23626900  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgttt 185  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||  |||||||||||| |||| |||||||    
T  23626899 gtcaatgatctttgttgttattgtaatatatggatattatgtttttctaaacagaaaagaaaatgcatgtgatgaacttttgttt 23626815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 29117157 - 29116989
Alignment:
Q  22 gagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttat 121  Q
    |||||| ||||  ||||||||||||| ||| |||||||||||| |||||| | | |||||||||||||||||||||| | ||||||||||||||| ||||    
T  29117157 gagtttcacttaagcttttgttaaataaaaaaactttatttttattaaatgtcaaagactttatttatgtttttgttaaatcaatgatctttgttattat 29117058  T
Q  122 tgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||| || ||||||||||||||||| |||||||  |||||||||||| |||| ||||||||||||    
T  29117057 tgtaatgtatgaatattatgttttgctaagaagaaaataaaatgcatgtgatgaacctttgtttctaaa 29116989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 43624570 - 43624395
Alignment:
Q  3 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatg--tttttgttga 100  Q
    ||||||| ||||||||| | || ||||| | ||||||||||||||||||||||||||||||| |||||| |||| | ||||||| |||  ||||| || |    
T  43624570 tgtttttattgaatatggtaagctttacatatgcttttgttaaatcaaagaactttatttttattaaatgtaaggggctttattaatggtttttttttta 43624471  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaa 176  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||  ||||||||||||||||    
T  43624470 gtcaatgatctttgttgttattgtaatatatggaaattatgttttgctaaaaagaaaagaaaatgcatgtgaagaa 43624395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 19841882 - 19841709
Alignment:
Q  5 tttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtca 104  Q
    ||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||| |||            || ||||||||||||||    
T  19841882 tttttcttgaatatgatgaactttacttatgcttttgttaaatcaaagaactttatttttattaaatgtaa------------atatttttgttgagtca 19841795  T
Q  105 atgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||||||||||||  ||||||||||||||  |||||||||||  ||| ||||||||||||| ||||||| ||||    
T  19841794 atgatctttgttgttattgtaatgtacggatattatgttttcttaaaaagaaaagaaaacgcatgtgaagaacctttgtttttaaa 19841709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 17120334 - 17120445
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaaca 178  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||  |||||||||||| ||||     
T  17120334 actttatttaggtttttgttgagtcaatgatcattgttgttattgtaatgtatggatattatgttttgttaaaaagaaaagaaaatgcatgtgatgaact 17120433  T
Q  179 tttgtttctaaa 190  Q
    ||||||| ||||    
T  17120434 tttgtttttaaa 17120445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 36464804 - 36464986
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| |||  || | ||||||| |||||||| |||||||||||| |||||| |||| ||  |||||||||||||| ||||    
T  36464804 tttgtttttgttgaatatgatgagctttgtttatacttttgtcaaatcaaataactttatttttattaaatgtaag-gaacttatttatgtttttattga 36464902  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||| ||||      |||||||||||| || |||| ||||||||||||||||||||  |||||||||||| |||| || |||| ||||    
T  36464903 gtcaataatct------ttattgtaatgtatgaatatcatgttttgctaaaaagaaaagaaaatgcatgtgatgaactttggtttttaaa 36464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17120281 - 17120342
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 62  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  17120281 tttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaaagaactttattt 17120342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 40571958 - 40572026
Alignment:
Q  79 actttatttatgtttttg-ttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttg 146  Q
    |||||||||||||||||  ||||||||| ||||||||||||| || |||| | | ||||||||||||||    
T  40571958 actttatttatgttttttattgagtcaaggatctttgttgttgttataatctatcgatattatgttttg 40572026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 23809649 - 23809833
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||| |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||| |||||| |||| |||||| ||||||||||||||||    
T  23809649 tttgtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttttttatgtttttgttga 23809748  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgttt 185  Q
    ||||||||||||||||||||||||||||| || | || ||||||||||||||||||||  ||||||||||||||||| |||||||    
T  23809749 gtcaatgatctttgttgttattgtaatgtatgaacatgatgttttgctaaaaagaaaagtaaatgcatgtgaagaacctttgttt 23809833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 5973117 - 5972929
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||| |||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  5973117 tttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtattttttga 5973018  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||  |||||| ||||||||||  |||||||||||    
T  5973017 gtcaatgatcttttttgttattgtaatgtatgaatattatgttttgctaaaatgaaaagaaaatgcctgtgaagaac-cttgtttctaaa 5972929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 2944053 - 2944233
Alignment:
Q  5 tttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtca 104  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||| ||||| || |||||| ||||||||| ||||||    
T  2944053 tttttgttgaatatgatgagttttatttatgcttttgttaaatcaaagaactttatatttattaaatgtaagaaacattatttttgtttttgtcgagtca 2944152  T
Q  105 atgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgttt 185  Q
    ||||||||||||||||||||||||  |||||| ||| |||||||||||||||||  |||||||||||| |||| |||||||    
T  2944153 atgatctttgttgttattgtaatgcatggatactatattttgctaaaaagaaaagaaaatgcatgtgatgaacttttgttt 2944233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 11039160 - 11039350
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||| |||||||||||||  ||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||      
T  11039160 tttgtttttattgaatatgatgaactttacttatacttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttgtgtttttgtttc 11039259  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaa-caaatgcatgtgaagaacatttgtttctaaa 190  Q
    || |||||||||| ||||||||||||| | || ||||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||||    
T  11039260 gttaatgatctttattgttattgtaatctatgaatattatgttttgctaaaaagaaaaagaaaatgcatgtgaagaacctttatttctaaa 11039350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 36298931 - 36298760
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||| |||| || | ||||||| ||||||||||||||||||| | ||||||||||   ||||||||||||||||||||||    
T  36298931 tttgtttttgttgaatatgatgagctttatttatacttttgtcaaatcaaagaactttatttgtattaaatataaagtactttatttatgtttttgttga 36298832  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtga 172  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||  ||||||| ||||    
T  36298831 gtcaatgatctttgttgttattgtaatatatggatattatggtttgctaaaaagaaaataaaatgcacgtga 36298760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 28636523 - 28636373
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||| |||||||||||||||  ||||||| || ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  28636523 tttgtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtttttgttga 28636424  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaa 151  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  28636423 gtcaatgatctttgtttttattgtaatgtatgaatattatgttttgctaaa 28636373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 30541465 - 30541649
Alignment:
Q  6 ttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaa 105  Q
    ||||||||||||||||||| |||||||  ||||||| || ||||||||||||||||||| |||||| ||| |||||| |||||||||||| || ||||||    
T  30541465 ttttgttgaatatgatgagctttacttaagcttttgatatatcaaagaactttatttttattaaatgtaatagacttgatttatgtttttcttaagtcaa 30541564  T
Q  106 tgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| ||||  |||||||||||| |||| | | ||||||||    
T  30541565 tgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtgatgaacctatttttctaaa 30541649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 7767218 - 7767031
Alignment:
Q  3 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagt 102  Q
    ||||||| |||||||||||||| |||||   | ||||||||||||||||||||||||| ||| |||||| ||| ||| ||||| ||||||||||||||||    
T  7767218 tgtttttcttgaatatgatgagctttaccaatacttttgttaaatcaaagaactttatgtttattaaatgtaaaagattttatgtatgtttttgttgagt 7767119  T
Q  103 caatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||| ||||||||||||||||| | || |||| ||||||||||||||||||||  |||||||||| |||||| ||||||||||||    
T  7767118 caatgatttttgttgttattgtaatctatgaatataatgttttgctaaaaagaaaagaaaatgcatgtaaagaacctttgtttctaaa 7767031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 25502287 - 25502108
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||||||||||||||  ||||||| || ||||||||||||||||| |||||          || ||||||||||||||||||||||||||||    
T  25502287 tttgtttttgttgaatatgatgaactttacttatgtttttgttaaatcaaagagcttta----------atgtaagagactttatttatgtttttgttga 25502198  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||||||| |||||||| || ||||||| |||||||||||||||||  |||||||| |||||||| ||||||||||||    
T  25502197 gtcaatgatctttgttgttaatgtaatgtatgaatattatattttgctaaaaagaaaataaaatgcatctgaagaacctttgtttctaaa 25502108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 31457420 - 31457228
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaacttt--atttttcttaaatataagagactttatttatgtttttgtt 98  Q
    |||||||||||||||||||||||  |||| || | |||||||||||||||||||||||  |||||| |||||||||||  ||||||||||||||||||||    
T  31457420 tttgtttttgttgaatatgatgaactttatttatacttttgttaaatcaaagaactttttatttttattaaatataaggaactttatttatgtttttgtt 31457321  T
Q  99 gagtcaatgatctt------tgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgttt 185  Q
    ||||||||||||||      ||||||||||||||||  || |||||||||||||||||||||||||  |||||||||||| |||| |||||||    
T  31457320 gagtcaatgatctttgtttttgttgttattgtaatgcatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgatgaacttttgttt 31457228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 38440431 - 38440604
Alignment:
Q  17 atgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgtt 116  Q
    |||||||  ||||||| || |||| |||||||||||||| |||||||| ||||||  |||  ||||||||||||||||||||||||||||||||||||||    
T  38440431 atgatgaactttacttatgttttttttaaatcaaagaacattatttttattaaatgcaaggaactttatttatgtttttgttgagtcaatgatctttgtt 38440530  T
Q  117 gttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    ||||||||||||| || |||||||||||| ||||||||||||  |||| |||||||||||  ||||||||||||    
T  38440531 gttattgtaatgtatgaatattatgttttactaaaaagaaaagaaaatccatgtgaagaatctttgtttctaaa 38440604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 33189542 - 33189362
Alignment:
Q  3 tgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagt 102  Q
    |||||||||||||||| ||||| ||||  | ||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  33189542 tgtttttgttgaatat-atgagctttagctatgcctttgttaaatcaaagaactttatttttattaaatgtaag-gactttatttatgtttttgttgagt 33189445  T
Q  103 caatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttct 187  Q
    ||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||  |||  |||||||||||| |||||||||    
T  33189444 caatgatcttt-ttgttattgtaatgtat-gatattatgtttttctaaaaagaaaagaaaacacatgtgaagaacctttgtttct 33189362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 22519173 - 22519329
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||||||||||| |||| |||||| |||   |||||||||||| ||| |||||    
T  22519173 tttgtttttgttgaatatgataaactttatttatgcttttgttaaatcaaagaactttacttttattaaatgtaatgaactttatttatg-tttcgttga 22519271  T
Q  101 gtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 158  Q
    |||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||||||    
T  22519272 gtcaatgaactttgttgtttttgtaatgtatagatattatgtttttctaaaaagaaaa 22519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 15954686 - 15954797
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaaca 178  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||  |||||||||||| ||||     
T  15954686 actttatttatgtttttggtgagtcaatgatctttgttgttattgtcatgtatgtctattatgttttgctaaaaagaaaagaaaatgcatgtgatgaact 15954785  T
Q  179 tttgtttctaaa 190  Q
    ||||||| ||||    
T  15954786 tttgtttttaaa 15954797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 1053127 - 1053249
Alignment:
Q  36 cttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggat 135  Q
    ||||||| |||| |||||||||||||||| ||||||  |||  | |||||||||||||||||||||| |||||||||||||||||| ||||||| || ||    
T  1053127 cttttgtcaaatgaaagaactttatttttattaaatgcaaggaattttatttatgtttttgttgagttaatgatctttgttgttatcgtaatgtatgaat 1053226  T
Q  136 attatgttttgctaaaaagaaaa 158  Q
    |||||||||||||||||| ||||    
T  1053227 attatgttttgctaaaaataaaa 1053249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 40910567 - 40910655
Alignment:
Q  102 tcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||||||||||||  |||||||||||| |||| ||||||| ||||    
T  40910567 tcaatgatctttgttgttattgtaatgtatgaatattacgttttgctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaa 40910655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 47925054 - 47924937
Alignment:
Q  80 ctttatttatgtttttgttgagtcaatgatctttgttgtta---ttgtaatgtgtggatattatgttttgctaaaaagaaaaa----caaatgcatgtga 172  Q
    |||||||||||||||||||||||||| ||||||| ||||||   ||||||||| || |||||||||||||||||||| |||||     ||||||||||||    
T  47925054 ctttatttatgtttttgttgagtcaaggatctttattgttattgttgtaatgtatgtatattatgttttgctaaaaaaaaaaaaaggaaaatgcatgtga 47924955  T
Q  173 agaacatttgtttctaaa 190  Q
     |||| ||||||| ||||    
T  47924954 tgaacttttgtttttaaa 47924937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 27337046 - 27336930
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 136  Q
    ||||||| |||||||||| ||||||| | |||||| ||    ||||||| ||||||||| ||||||||| ||||||||||||| || |||| | | ||||    
T  27337046 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatctatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 27336947  T
Q  137 ttatgttttgctaaaaa 153  Q
    |||||||||||||||||    
T  27336946 ttatgttttgctaaaaa 27336930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 31759041 - 31758962
Alignment:
Q  80 ctttatttatgtttttgt-tgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaa 158  Q
    |||||| ||| ||||||| ||||||||| ||||||||| |||||||||||| |  ||||||||||||| |||||||||||    
T  31759041 ctttatctatatttttgtctgagtcaataatctttgttcttattgtaatgtatatatattatgttttgttaaaaagaaaa 31758962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 15954066 - 15954130
Alignment:
Q  5 tttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaa 69  Q
    ||||||||| ||||||| || |||| || ||||||||||||||||| ||||||||||||| ||||    
T  15954066 tttttgttggatatgatcagctttatttatgcttttgttaaatcaatgaactttatttttattaa 15954130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 14753979 - 14754083
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttga 100  Q
    |||||||||||| ||||||||||  |||| || || || ||||||||||| ||||||  ||||| |||||| | |   || ||||| ||||||||||| |    
T  14753979 tttgtttttgttaaatatgatgaactttatttatgtttgtgttaaatcaaggaacttagtttttgttaaatgtgatgaacattattcatgtttttgttta 14754078  T
Q  101 gtcaa 105  Q
    |||||    
T  14754079 gtcaa 14754083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 6865 - 7047
Alignment:
Q  4 gtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtc 103  Q
    |||| |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||| ||| || |||  ||| | ||||||||||||||||||||    
T  6865 gtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaagaattttatttttattatatgtaatggacctcatttatgtttttgttgagtc 6964  T
Q  104 aatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttc 186  Q
    |||||||||||||||||||||||  | || |||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  6965 aatgatctttgttgttattgtaaaatatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgaagaacctttgtttc 7047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 62527 - 62439
Alignment:
Q  102 tcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaaacaaatgcatgtgaagaacatttgtttctaaa 190  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||||||||||||  |||||||||||| |||| ||||||| ||||    
T  62527 tcaatgatctttgttgttattgtaatgtatgaatattacgttttgctaaaaagaaaagaaaatgcatgtgatgaacttttgtttttaaa 62439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 22168 - 22052
Alignment:
Q  37 ttttgttaaatcaaagaactttatttttcttaaatataagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggata 136  Q
    ||||||| |||||||||| ||||||| | |||||| ||    ||||||||||||||||| ||||||||| ||||||||||||| || |||| | | ||||    
T  22168 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 22069  T
Q  137 ttatgttttgctaaaaa 153  Q
    |||||||||||||||||    
T  22068 ttatgttttgctaaaaa 22052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 66619 - 66580
Alignment:
Q  79 actttatttatgtttttgttgagtcaatgatctttgttgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  66619 actttatttatgtttttgttgagtcaatgatctttgttgt 66580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 66672 - 66611
Alignment:
Q  1 tttgtttttgttgaatatgatgagttttacttgtgcttttgttaaatcaaagaactttattt 62  Q
    |||||||||| ||||||||||||| |||| || | ||||||| |||||||||||||||||||    
T  66672 tttgtttttggtgaatatgatgagctttatttatacttttgtcaaatcaaagaactttattt 66611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University