View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_105 (Length: 237)
Name: NF17203_high_105
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_105 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48707747 - 48707987
Alignment:
| Q |
1 |
agcatggagaaataatttgtgaaggttatgatgaagggccttgctttcaaagaatttcaaaaccaacctattatcaatatccaattcctccaaggtttga |
100 |
Q |
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| T |
48707747 |
agcatggagaaataatttgtgaaggttatgatgaagggccttgctttcaaagaatttcaaaaccaatctattatcaatatccaattcctccaaggtttga |
48707846 |
T |
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| Q |
101 |
ctccaaatttgtactattttaaatatatatcattcattctggattctgaatatagaggt-----ttgtgttgtgttgtgctggattcagcagagatgcag |
195 |
Q |
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| T |
48707847 |
ctccaaatttgtactattttaaatatatatcattcattctggattctgaatatagaggtttgtgttgtgttgtgttgtgctggattcagcagagatgcag |
48707946 |
T |
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| Q |
196 |
aaatcacaaatattcttcttcgacaaagttggctccagatc |
236 |
Q |
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| T |
48707947 |
aaatcacaaatattcttcttcgacaaagttggctccagatc |
48707987 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 8259779 - 8259744
Alignment:
| Q |
5 |
tggagaaataatttgtgaaggttatgatgaagggcc |
40 |
Q |
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| T |
8259779 |
tggagaaataatttgtgaagggtatgatgaagggcc |
8259744 |
T |
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