View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_120 (Length: 211)
Name: NF17203_high_120
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_120 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 38341488 - 38341359
Alignment:
| Q |
65 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctcggcgaagaaaaagatgtggtaaacttatcaggcaattt |
164 |
Q |
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| T |
38341488 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctcggcgaagaaaaagatgtggtaaacttatcaggcatttt |
38341389 |
T |
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| Q |
165 |
tttaactgttgtccatgattattatatttt |
194 |
Q |
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| T |
38341388 |
tttaactgttgtccatgattattatatttt |
38341359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 38333736 - 38333610
Alignment:
| Q |
65 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctcggcgaagaaaaagatgtggtaaacttatcaggcaattt |
164 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| | || | |
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| T |
38333736 |
ggctaatgatgattcagaaaaggttactgaagaacctcctaaaaagttcccccatgcatctcggcgaagaaaaagatgtggtaaacttgtcaaactatat |
38333637 |
T |
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| Q |
165 |
tttaactgttgtccatgattattatat |
191 |
Q |
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| T |
38333636 |
tttaactattgtctatgatgattatat |
38333610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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