View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_122 (Length: 206)
Name: NF17203_high_122
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_122 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 51530108 - 51529936
Alignment:
| Q |
19 |
tataatgcatacattccccaaagcaaccaacaagaagggctcataaaatccaaaaccagtgaggatgttccctggggtgtgatcaccaaatgcagcatag |
118 |
Q |
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| T |
51530108 |
tataatgcatacattccccaaagcaaccaacaagaagggctcataaaatccaaaaccagtgaggatgttccctggggtgtgatcaccaaatgcagcatag |
51530009 |
T |
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| Q |
119 |
ccaagtgaaccacataggaggaaaagtattgtcattgtagtgatccccaacatatttgccttcctcatctgtg |
191 |
Q |
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| T |
51530008 |
ccaagtgaaccacataggaggaaaagtattgtcattgtagtgatccccaacatatttgccttcctcatctgtg |
51529936 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 221965 - 222038
Alignment:
| Q |
83 |
atgttccctggggtgtgatcaccaaatgcagcatagccaagtgaaccacataggaggaaaagtattgtcattgt |
156 |
Q |
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| T |
221965 |
atgtttcctggtgtgtggtcaccaaaagcagcatagccaaggcaactacatagtaggaatatcattgtcattgt |
222038 |
T |
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