View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_20 (Length: 547)
Name: NF17203_high_20
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 13 - 529
Target Start/End: Complemental strand, 47694702 - 47694181
Alignment:
| Q |
13 |
agcagagaaaagtaaagaggtaagaatctaataattccatattataacnnnnnnntaa-----tctgaattcacactcatgacaagaaaaacctgctctt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
47694702 |
agcagagaaaagtaaagaggtaagaatctaataattccatattataacagaagaaaaaaaaaatctgaattcacactcatgacaagaaaaacctgctctt |
47694603 |
T |
|
| Q |
108 |
tttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgactggttaaggta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47694602 |
tttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgactggttaaggta |
47694503 |
T |
|
| Q |
208 |
gtgatatgttttaggatgtcctaatttgtatttctcgatttcctgtcaacataaattgtaatgagtttatataattaaaagaataaatagaaagtaagct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47694502 |
gtgatatgttttaggatgtcctaatttgtatttctcgatttcctgtcaacataaattctaatgagtttatataattaaaagaataaatagaaagtaagct |
47694403 |
T |
|
| Q |
308 |
atgaagaagttaacctcttgtggtgcagcacaaagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaa |
407 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47694402 |
atgaagaagttaacctcttgtggtgcagcacaaagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaa |
47694303 |
T |
|
| Q |
408 |
ggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaagagaatgatatttt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47694302 |
ggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaagagaatgatatttt |
47694203 |
T |
|
| Q |
508 |
ttaaactaataattggtaaaag |
529 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
47694202 |
ttaaactaataattgataaaag |
47694181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 98 - 493
Target Start/End: Original strand, 35831258 - 35831655
Alignment:
| Q |
98 |
acctgctctttttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgact |
197 |
Q |
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||||| ||||| || | ||||||||| ||| |||||||||| | |||||| ||||||||| ||||||| ||| |||||||| ||||||||||| |||| |
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| T |
35831258 |
acctgatctttgtgacctattccaacaatacccatagctctacgggtggcgagatactcatgagcatcatttacatcagccagttcatagcattgtgact |
35831357 |
T |
|
| Q |
198 |
ggttaaggtagtgatatgttttaggatgtcctaatttgtatttctcgatttcctgtcaacataaattgtaatgagtttatataattaaaagaat-aaata |
296 |
Q |
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|||||||||||||| | | |||||||| |||||||||||||||||| |||||||||| || || ||| | |||| ||| |||||| || |||| ||| | |
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| T |
35831358 |
ggttaaggtagtgaaacgatttaggatttcctaatttgtatttctcaatttcctgtcggcagaacttgga-tgagcttacataattgaatgaatcaaaca |
35831456 |
T |
|
| Q |
297 |
gaaagtaagctat-gaagaagtta-acctcttgtggtgcagcacaaagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgt |
394 |
Q |
| |
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|||||| | | || | || ||||| |||||||| || ||||||||||| |||||||||||||| ||||| || ||||||| ||| || ||||| |
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| T |
35831457 |
aaaagtagattgtagacggagagctacctcctgtggtgcggcgcaaagaagataaaagcagtggtagtttcgttcaggatcattaatttgacagacccga |
35831556 |
T |
|
| Q |
395 |
gatctctcaagaaggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaa |
493 |
Q |
| |
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|||||||| |||||||| || || |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
35831557 |
gatctctctagaaggtatgttcggatggctgctcctgagattcttccgctcttatcaaattggatctcaacaaatttaccaaaacggctgcaccattaa |
35831655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 486
Target Start/End: Original strand, 31011316 - 31011420
Alignment:
| Q |
382 |
ttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaacga |
481 |
Q |
| |
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||||||||| || ||| |||| ||||| || || | ||||||||| || || |||| |||| |||||||||||| ||||||||||| || |||||||| |
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| T |
31011316 |
ttggcaaacacgagatttctcgagaagataagttctaatggctgcaccggatattcgtccatacttatcaaattgaatctcaacaaattttccaaaacgg |
31011415 |
T |
|
| Q |
482 |
ctgca |
486 |
Q |
| |
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||||| |
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| T |
31011416 |
ctgca |
31011420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Original strand, 29902588 - 29902625
Alignment:
| Q |
449 |
tcaaattggatctcaacaaacttaccaaaacgactgca |
486 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||| |
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| T |
29902588 |
tcaaattgaatctccacaaacttaccaaaacgactgca |
29902625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 485
Target Start/End: Complemental strand, 26465537 - 26465431
Alignment:
| Q |
379 |
aacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaa |
478 |
Q |
| |
|
|||||||||||| || ||||| ||||| ||||||||||| || || || || || || | ||| |||| |||||||| || |||||||||||||||||| |
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| T |
26465537 |
aacttggcaaacacgagatctttcaaggaggtacgtacggatcgcagctccagaaatcttcccattcttgtcaaattgaatttcaacaaacttaccaaaa |
26465438 |
T |
|
| Q |
479 |
cgactgc |
485 |
Q |
| |
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||||||| |
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|
| T |
26465437 |
cgactgc |
26465431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Original strand, 52154475 - 52154512
Alignment:
| Q |
449 |
tcaaattggatctcaacaaacttaccaaaacgactgca |
486 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||| |
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| T |
52154475 |
tcaaattgtatctcaacaaatttaccaaaacgactgca |
52154512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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