View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_high_23 (Length: 484)

Name: NF17203_high_23
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_high_23
NF17203_high_23
[»] chr8 (15 HSPs)
chr8 (17-484)||(44912590-44913057)
chr8 (306-484)||(44913573-44913751)
chr8 (144-243)||(197917-198017)
chr8 (144-243)||(312754-312854)
chr8 (144-254)||(30406025-30406136)
chr8 (20-115)||(43811253-43811348)
chr8 (287-355)||(25479794-25479862)
chr8 (18-109)||(10683365-10683456)
chr8 (283-356)||(6414582-6414655)
chr8 (18-115)||(28647201-28647298)
chr8 (144-243)||(43807716-43807816)
chr8 (36-115)||(201454-201533)
chr8 (36-115)||(316291-316370)
chr8 (36-115)||(30409573-30409652)
chr8 (199-243)||(41949682-41949726)
[»] chr4 (12 HSPs)
chr4 (309-466)||(40414457-40414615)
chr4 (306-434)||(24412778-24412906)
chr4 (314-413)||(24412922-24413021)
chr4 (14-105)||(20290288-20290379)
chr4 (277-359)||(26905317-26905398)
chr4 (150-243)||(8892854-8892948)
chr4 (144-260)||(50628146-50628263)
chr4 (36-115)||(44147866-44147945)
chr4 (39-115)||(27186950-27187026)
chr4 (149-260)||(31358981-31359093)
chr4 (144-243)||(44151382-44151482)
chr4 (20-115)||(43682949-43683044)
[»] chr6 (9 HSPs)
chr6 (318-465)||(5437791-5437938)
chr6 (144-243)||(8315737-8315837)
chr6 (144-243)||(27552343-27552443)
chr6 (20-115)||(27571502-27571597)
chr6 (144-222)||(3596396-3596475)
chr6 (36-115)||(8319274-8319353)
chr6 (155-243)||(17887078-17887167)
chr6 (39-115)||(17881249-17881325)
chr6 (38-115)||(23254362-23254439)
[»] chr3 (10 HSPs)
chr3 (16-133)||(22931059-22931176)
chr3 (144-243)||(54167577-54167677)
chr3 (144-243)||(21850023-21850123)
chr3 (36-115)||(54171114-54171193)
chr3 (318-388)||(22931765-22931835)
chr3 (13-115)||(43548500-43548602)
chr3 (318-359)||(36082722-36082763)
chr3 (39-115)||(9698392-9698468)
chr3 (36-115)||(21847936-21848015)
chr3 (427-480)||(1299260-1299312)
[»] chr1 (8 HSPs)
chr1 (318-435)||(30647445-30647565)
chr1 (318-435)||(30642631-30642748)
chr1 (144-243)||(26315837-26315937)
chr1 (318-358)||(51866548-51866588)
chr1 (36-115)||(26312321-26312400)
chr1 (36-115)||(39794703-39794782)
chr1 (144-273)||(30647189-30647319)
chr1 (143-260)||(43592037-43592155)
[»] scaffold0044 (2 HSPs)
scaffold0044 (144-243)||(45098-45198)
scaffold0044 (36-115)||(48635-48714)
[»] chr5 (16 HSPs)
chr5 (144-243)||(12023113-12023213)
chr5 (39-111)||(16598148-16598220)
chr5 (144-243)||(37681860-37681960)
chr5 (20-115)||(12019581-12019676)
chr5 (20-115)||(37659519-37659614)
chr5 (20-115)||(40371017-40371112)
chr5 (144-243)||(7099607-7099707)
chr5 (144-243)||(16798493-16798593)
chr5 (36-115)||(7103144-7103223)
chr5 (36-115)||(16794977-16795056)
chr5 (36-115)||(30696104-30696183)
chr5 (144-260)||(10277028-10277145)
chr5 (36-77)||(30048126-30048167)
chr5 (144-243)||(40367833-40367933)
chr5 (13-115)||(10275322-10275424)
chr5 (144-189)||(30067058-30067103)
[»] scaffold0440 (2 HSPs)
scaffold0440 (144-243)||(7330-7430)
scaffold0440 (144-243)||(2804-2904)
[»] chr2 (8 HSPs)
chr2 (144-243)||(8055216-8055316)
chr2 (26-142)||(17256078-17256194)
chr2 (144-243)||(36674875-36674975)
chr2 (36-115)||(8051700-8051779)
chr2 (36-115)||(36671359-36671438)
chr2 (318-359)||(7468129-7468170)
chr2 (36-115)||(35953862-35953941)
chr2 (144-273)||(35950641-35950771)
[»] chr7 (6 HSPs)
chr7 (20-126)||(730400-730506)
chr7 (147-243)||(27761224-27761321)
chr7 (144-243)||(7940316-7940416)
chr7 (149-240)||(13828340-13828432)
chr7 (36-115)||(7943853-7943932)
chr7 (36-111)||(27757705-27757780)
[»] scaffold0019 (1 HSPs)
scaffold0019 (292-359)||(59575-59642)


Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 44913057 - 44912590
Alignment:
Q  17 ttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44913057 ttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgtg 44912958  T
Q  117 gggaaacaatttatgatcatcaaattaaagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatttccattgttctactgagctg 216  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44912957 gggaaacaatttatgatcatcaaattgaagtaaagtttcattttcttagggaataagtaaacaaaggggctctaaagatttccattgttctactgagctg 44912858  T
Q  217 caacttcctgacatattcactaaggcagttaagattgaaaggttgaacaagtttagactatatacccgttggggtatatattatacatattggggtttaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  44912857 caacttcctgacatattcactaaggcagttaagattgaaaggttgaacaagtttagactatatacccgttcgggtatatattatacatattggggtataa 44912758  T
Q  317 aagtttgttacaagttagttagataatctagctaagtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttcttatataagata 416  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44912757 aagtttgttacaagttagttaggtaatctagctaagtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttcttatataagaca 44912658  T
Q  417 tgatgtagtcacttttcacaattaataaaactcataagattacaacaattaatattctctttcttctc 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44912657 tgatgtagtcacttttcacaattaataaaactcataagattacaacaattaatattctctttcttctc 44912590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 306 - 484
Target Start/End: Complemental strand, 44913751 - 44913573
Alignment:
Q  306 ttggggtttaaaagtttgttacaagttagttagataatctagctaagtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttct 405  Q
    ||||||| || |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||| ||||| |||| ||||||||| |    
T  44913751 ttggggtatagaagtttgttacaagttagttaggtaatctagctatatttgttatgtttgtttagatagcttactaagcaagcaatgtgaataagctttt 44913652  T
Q  406 tatataagatatgatgtagtcacttttcacaattaataaaactcataagattacaacaattaatattctctttcttctc 484  Q
    ||||||||  |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||| |||||    
T  44913651 tatataaggcatgatgtaatcacttttcacaactaatgaaactcataagattacaacaattaatcatctctttattctc 44913573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 198017 - 197917
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  198017 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 197918  T
Q  243 a 243  Q
    |    
T  197917 a 197917  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 312854 - 312754
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  312854 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 312755  T
Q  243 a 243  Q
    |    
T  312754 a 312754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 30406136 - 30406025
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||||||||| |||||||| ||||||||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  30406136 aagcaaagttccattttctaagggaacaagtgaacaagggagcactgcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 30406037  T
Q  243 agttaagattga 254  Q
    | | ||||||||    
T  30406036 attgaagattga 30406025  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 43811348 - 43811253
Alignment:
Q  20 agaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||||| ||||| | |||| |||| ||||||||||||||||||    
T  43811348 agaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcattaatcttgtgaatcagatgaaggcttgt 43811253  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 25479794 - 25479862
Alignment:
Q  287 ggggtatatattatacatattggggtttaaaagtttgttacaagttagttagataatctagctaagttt 355  Q
    |||||||||||||||| | | ||||| ||||||||||||| |||||||||||  |||||||||||||||    
T  25479794 ggggtatatattatacttgtaggggtataaaagtttgttaaaagttagttaggaaatctagctaagttt 25479862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 10683456 - 10683365
Alignment:
Q  18 taagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaag 109  Q
    ||||||| || ||| || ||||||| |||||||||||  |||| |||||||||||||| |||||||||| |||| || | ||||||||||||    
T  10683456 taagaaggaaatttaaactgatgcagatggaagatgataaaaaaattgttgattacatatccaaactgattaatattttcaatcagatgaag 10683365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 6414582 - 6414655
Alignment:
Q  283 cgttggggtatatattatacatattggggtttaaaagtttgttacaagttagttagataatctagctaagtttg 356  Q
    |||||||| |||||||||||   | ||||| ||||||||||| ||||||||||||| ||||| |||||||||||    
T  6414582 cgttggggaatatattatacccttgggggtataaaagtttgtcacaagttagttaggtaatcaagctaagtttg 6414655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 28647201 - 28647298
Alignment:
Q  18 taagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||||| ||||  |  ||| |||| ||||||||||||||||||    
T  28647201 taagaaggaaatttgaactgatgcaaatggaagatgatcagaagatttctgaatacatctctaaacacatcaatcttgtgaatcagatgaaggcttgt 28647298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 43807816 - 43807716
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  43807816 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 43807717  T
Q  243 a 243  Q
    |    
T  43807716 a 43807716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 201533 - 201454
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  201533 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 201454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 316370 - 316291
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  316370 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 316291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 30409652 - 30409573
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  30409652 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 30409573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 41949682 - 41949726
Alignment:
Q  199 cattgttctactgagctgcaacttcctgacatattcactaaggca 243  Q
    ||||| |||||||||||||| ||| | ||||||||||||||||||    
T  41949682 cattgctctactgagctgcagcttgcagacatattcactaaggca 41949726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 309 - 466
Target Start/End: Complemental strand, 40414615 - 40414457
Alignment:
Q  309 gggtttaaaagtttgttacaagttagttagataatctagctaagtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttcttat 408  Q
    |||| |||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  40414615 gggtataaaggtttattacaagttagttagttaatctaactaagtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttat 40414516  T
Q  409 ataagatatgatgtagtcacttttcacaattaat-aaaactcataagattacaacaatt 466  Q
    |||||  ||| |||| ||||||||||| | |||| ||||||| |||| |||||||||||    
T  40414515 ataaggcatgttgtaatcacttttcactaataatgaaaactcgtaagtttacaacaatt 40414457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 306 - 434
Target Start/End: Complemental strand, 24412906 - 24412778
Alignment:
Q  306 ttggggtttaaaagtttgttacaagttagttagataatctagctaagtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttct 405  Q
    ||||||| |||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||| |||    
T  24412906 ttggggtataaaagtttgttacaagtaagttatgtaatctaactaagtttgttatgtttgtttagatagtttactaagcaagcaatgtgaataagcctct 24412807  T
Q  406 tatataagatatgatgtagtcacttttca 434  Q
    ||||||||  | | |||| ||||||||||    
T  24412806 tatataaggcacgttgtaatcacttttca 24412778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 24413021 - 24412922
Alignment:
Q  314 taaaagtttgttacaagttagttagataatctagctaagtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttcttatataag 413  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || |||| ||||| |||| ||||||| |||||||||||    
T  24413021 taaaagtttgttacaagttagttaggtaatctagctaagtttgttacgtttggttagatagtttgctaagcaagcaatgtgaataagcctcttatataag 24412922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 20290288 - 20290379
Alignment:
Q  14 tcattaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagat 105  Q
    ||||| ||||| |||||| || ||||||||||||| |||||| | ||||||| |||||||||||||||||| |  |||||||||||||||||    
T  20290288 tcattgagaaggaagtttaaattgatgcaaatggaggatgagaagaagattgctgattacatctccaaactaatcaatgttgtaaatcagat 20290379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 26905317 - 26905398
Alignment:
Q  277 tatacccgttggggtatatattatacatattggggtttaaaagtttgttacaagttagttagataatctagctaagtttgtta 359  Q
    ||||||| |||| ||||||||||||| |   ||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  26905317 tatacccattggagtatatattatacttgg-ggggtataaaagtttgttacaagttagttagaaaatctagctaagtttgtta 26905398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 8892948 - 8892854
Alignment:
Q  150 agtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggca 243  Q
    |||| |||||||| ||||| ||||| ||||| || || ||| ||||| | ||||| |||||||||||||||||| | ||||||||||||||||||    
T  8892948 agttccattttctgagggagcaagtgaacaagggagcactacagattgttcattgctctactgagctgcaacttgcagacatattcactaaggca 8892854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 50628263 - 50628146
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||||||||||| ||| | |||||||||||||||||    
T  50628263 aagccaagtttcattttctgagggagcaagtgaacaagggagcactgtagattgttcattgctctactgagctgcagcttgcagacatattcactaaggc 50628164  T
Q  243 agttaagattgaaaggtt 260  Q
    | | ||| |||| |||||    
T  50628163 attgaaggttgacaggtt 50628146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 44147866 - 44147945
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  44147866 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 44147945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 27186950 - 27187026
Alignment:
Q  39 tgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    |||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  27186950 tgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 27187026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 31358981 - 31359093
Alignment:
Q  149 aagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggcagtta 247  Q
    |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||||||||||| ||| | |||||||||| ||||||| | |    
T  31358981 aagtttcattttctgagggagcaagtgaacaagggagcactgtagattgttcattgctctactgagctgcagcttgcagacatattcattaaggcattga 31359080  T
Q  248 agattgaaaggtt 260  Q
    || |||| |||||    
T  31359081 aggttgacaggtt 31359093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 44151382 - 44151482
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||| ||||||| ||| | |||||||||||||||||    
T  44151382 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactaagctgcagcttgcagacatattcactaaggc 44151481  T
Q  243 a 243  Q
    |    
T  44151482 a 44151482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 43683044 - 43682949
Alignment:
Q  20 agaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||| || |||||| |||| |||||||||||||| || ||||||  ||| |||||||| || || |  ||| |||| ||||||||||||||||||    
T  43683044 agaaggaaatttgaactgatacaaatggaagatgatcagaagatttctgaatacatctctaacctcatcaatcttgtgaatcagatgaaggcttgt 43682949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 318 - 465
Target Start/End: Original strand, 5437791 - 5437938
Alignment:
Q  318 agtttgttacaagttagttagataatctagcta-agtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttcttatataagata 416  Q
    ||||||||||| |||||||||| || ||||||  |||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||  |    
T  5437791 agtttgttacaggttagttagaaaa-ctagcttgagtttgttatgtttgtttagatagcttactaagcaagcaatgtgaataagcctcttatataaggca 5437889  T
Q  417 tgatgtagtcacttttcacaattaataaaactcataagattacaacaat 465  Q
    || |||| ||| ||||||||| |||| |||||||  |||||||||||||    
T  5437890 tgttgtaatcatttttcacaactaatgaaactcaatagattacaacaat 5437938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 8315837 - 8315737
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | ||||| |||||||||||| | ||| | |||||||||||||||||    
T  8315837 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgatctactgagctgaagcttgcagacatattcactaaggc 8315738  T
Q  243 a 243  Q
    |    
T  8315737 a 8315737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 27552443 - 27552343
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| |||||||||||||| ||||| ||||||||||| || || ||  ||||| | ||||| |||||||||||||| ||| | |||||||||||||||||    
T  27552443 aagccaagtttcattttctaagggagcaagtaaacaagggagcactgcagattgttcattgctctactgagctgcagcttgcagacatattcactaaggc 27552344  T
Q  243 a 243  Q
    |    
T  27552343 a 27552343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 27571597 - 27571502
Alignment:
Q  20 agaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||| ||||||||| |||||||||||||||||||  | ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  27571597 agaaggaagtttgaactgatgcaaatggaagatgaatagaagatttctgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 27571502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 3596396 - 3596475
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaactt 222  Q
    |||| |||||||| |||||||||||||||||||||||    ||  | |||||| ||||||||||||||||||||||||||    
T  3596396 aagctaagtttcactttcttagggaacaagtaaacaagcaagcattgaagattgtccattgttctactgagctgcaactt 3596475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 8319353 - 8319274
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  8319353 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 8319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 17887167 - 17887078
Alignment:
Q  155 cattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggca 243  Q
    |||||||| ||||| ||||||||||| || || ||  ||||| | ||||| |||||||||||||| ||| | ||||||||||||||||||    
T  17887167 cattttctgagggagcaagtaaacaagggagcactgcagattgttcattgctctactgagctgcagcttgcagacatattcactaaggca 17887078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 17881325 - 17881249
Alignment:
Q  39 tgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    |||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  17881325 tgcaaatggaagatgatcataagatttatgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 17881249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 23254362 - 23254439
Alignment:
Q  38 atgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||| ||||| |||||| | ||||||||||| |||||||| ||||| |  ||| |||| ||||| ||||||||||||    
T  23254362 atgcagatggaggatgagtagaagattgttgagtacatctctaaacttatcaatattgtgaatcaaatgaaggcttgt 23254439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 22931176 - 22931059
Alignment:
Q  16 attaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||| || |||||  |||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||    
T  22931176 attaagaaggaaatttgagttgatgcaaatggaagatgagaaaaagattgttgattacatctccatgctgattaatgttgtaaatcagatgaaggtttgt 22931077  T
Q  116 ggggaaacaatttatgat 133  Q
     | | |||||||| ||||    
T  22931076 agtggaacaatttctgat 22931059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 54167677 - 54167577
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  54167677 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 54167578  T
Q  243 a 243  Q
    |    
T  54167577 a 54167577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 21850023 - 21850123
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||||||||||| ||| | |||||||||||||||||    
T  21850023 aagcaaagtttcattttctaagggagcaagtgaacaagggagcactgcagattgttcattgctctactgagctgcagcttgcagacatattcactaaggc 21850122  T
Q  243 a 243  Q
    |    
T  21850123 a 21850123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 54171193 - 54171114
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| |||||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  54171193 tgatgcaaatggaagatgatcaaaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 54171114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 22931835 - 22931765
Alignment:
Q  318 agtttgttacaagttagttagataatctagctaagtttgttatgtttgtttagatagcttactaaacaagc 388  Q
    |||||||||||||| ||| || | || ||||||||||||||| |||||||||||| ||||||||| |||||    
T  22931835 agtttgttacaagtgagtcaggtgatgtagctaagtttgttaagtttgtttagattgcttactaagcaagc 22931765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 43548500 - 43548602
Alignment:
Q  13 atcattaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggct 112  Q
    |||| ||||||| || |||||  ||||||| ||||||||||| |||||||||  ||| ||||| || ||||| |  ||| |||| |||||||||||||||    
T  43548500 atcactaagaaggaaatttgagctgatgcagatggaagatgatcaaaagatttctgaatacatatctaaactcatcaatcttgtgaatcagatgaaggct 43548599  T
Q  113 tgt 115  Q
    |||    
T  43548600 tgt 43548602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 36082722 - 36082763
Alignment:
Q  318 agtttgttacaagttagttagataatctagctaagtttgtta 359  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  36082722 agtttgttacaagttagttaggtgatctagctaagtttgtta 36082763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 9698392 - 9698468
Alignment:
Q  39 tgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    |||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  9698392 tgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 9698468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 21847936 - 21848015
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  | | |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  21847936 tgatgcaaatggaagatgatcagaagatttctaagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 21848015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 1299260 - 1299312
Alignment:
Q  427 acttttcacaattaataaaactcataagattacaacaattaatattctctttct 480  Q
    ||||||||| | |||| ||||||||||||||||||||| |||| ||||||||||    
T  1299260 acttttcactactaatgaaactcataagattacaacaa-taatcttctctttct 1299312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 435
Target Start/End: Original strand, 30647445 - 30647565
Alignment:
Q  318 agtttgttacaagttagttagata---atctagcta-agtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttcttatataag 413  Q
    ||||||||||||||||||||| ||   | ||||||  |||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  30647445 agtttgttacaagttagttagttagagagctagcttgagttggttatgtttgtttagatagcttactaaccaagc-atgtaaataagcctcttatataag 30647543  T
Q  414 atatgatgtagtcacttttcac 435  Q
      ||| |||| |||||||||||    
T  30647544 gcatgttgtaatcacttttcac 30647565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 435
Target Start/End: Original strand, 30642631 - 30642748
Alignment:
Q  318 agtttgttacaagttagttagataatctagcta-agtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttcttatataagata 416  Q
    ||||||||||||||||| |||| || |||| |  |||| ||||||||||||||||||| ||||||  ||||| | |||||||||| |||||||||||  |    
T  30642631 agtttgttacaagttagctagagaa-ctagattgagttggttatgtttgtttagatagtttactatgcaagcaaggtaaataagcctcttatataaggca 30642729  T
Q  417 tgatgtagtcacttttcac 435  Q
    || |||| |||||||||||    
T  30642730 tgctgtaatcacttttcac 30642748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 26315837 - 26315937
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  26315837 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 26315936  T
Q  243 a 243  Q
    |    
T  26315937 a 26315937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 51866588 - 51866548
Alignment:
Q  318 agtttgttacaagttagttagataatctagctaagtttgtt 358  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  51866588 agtttgttacaagttagttagatgatctagctaagtttgtt 51866548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 26312321 - 26312400
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  26312321 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 26312400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 39794703 - 39794782
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  39794703 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 39794782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 30647189 - 30647319
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||||||||| |||||||||||||||||  ||| |||||| ||||||||| || |||||||||| |||||  |||| ||| |  | || |||||||||||    
T  30647189 aagcaaagttccattttcttagggaacagttaaccaaaggagctctaaaggttgtccattgttccactgatttgcagcttgcgaatatgttcactaaggc 30647288  T
Q  243 agttaagattgaaaggttgaacaagtttaga 273  Q
      | |||||||  ||||| |||||| |||||    
T  30647289 tatgaagattgtcaggtttaacaagcttaga 30647319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 43592155 - 43592037
Alignment:
Q  143 aaagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaagg 241  Q
    ||||| ||||| |||||| | ||||| ||||| ||||| || |||||  ||||| | ||||| ||||||||||| |||||| | ||||||||||||||||    
T  43592155 aaagctaagttccattttatgagggaccaagtgaacaagggagctctgtagattgttcattgctctactgagctacaacttgcagacatattcactaagg 43592056  T
Q  242 cagttaagattgaaaggtt 260  Q
    || | ||| |||| |||||    
T  43592055 cattgaaggttgacaggtt 43592037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 45198 - 45098
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  45198 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 45099  T
Q  243 a 243  Q
    |    
T  45098 a 45098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 48714 - 48635
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  48714 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 48635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 12023113 - 12023213
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  12023113 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 12023212  T
Q  243 a 243  Q
    |    
T  12023213 a 12023213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 16598220 - 16598148
Alignment:
Q  39 tgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggc 111  Q
    ||||||||||||||||||| |||||||||||||||||||| ||  ||| |||||||| ||||| |||||||||    
T  16598220 tgcaaatggaagatgagcagaagattgttgattacatctctaagatgattaatgttgaaaatcggatgaaggc 16598148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 37681860 - 37681960
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||| | ||||| || || ||| ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  37681860 aagcaaagtttcattttctgagggagcaaatgaacaagggagcactacagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 37681959  T
Q  243 a 243  Q
    |    
T  37681960 a 37681960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 12019581 - 12019676
Alignment:
Q  20 agaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||||| ||||| | |||| |||| ||||||||||||||||||    
T  12019581 agaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcattaatcttgtgaatcagatgaaggcttgt 12019676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 37659519 - 37659614
Alignment:
Q  20 agaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||||| ||||| | |||| |||| ||||||||||||||||||    
T  37659519 agaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcattaatcttgtgaatcagatgaaggcttgt 37659614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 40371112 - 40371017
Alignment:
Q  20 agaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||| || |||||| ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  40371112 agaaggaaatttgaactgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 40371017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 7099707 - 7099607
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  7099707 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 7099608  T
Q  243 a 243  Q
    |    
T  7099607 a 7099607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 16798493 - 16798593
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  16798493 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 16798592  T
Q  243 a 243  Q
    |    
T  16798593 a 16798593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 7103223 - 7103144
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  7103223 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 7103144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 16794977 - 16795056
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  16794977 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 16795056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 30696104 - 30696183
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  30696104 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 30696183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 10277028 - 10277145
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| ||||||||||| || ||| | |||||||||||||||||    
T  10277028 aagccaagtttcattttctgagggagcaagtgaacaagggagcactgcagattgttcattgctctactgagctacagcttgcggacatattcactaaggc 10277127  T
Q  243 agttaagattgaaaggtt 260  Q
    | | ||| |||| |||||    
T  10277128 attgaaggttgacaggtt 10277145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 30048126 - 30048167
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatct 77  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  30048126 tgatgcaaatggaagaggagcaaaagattcttgattacatct 30048167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 40367933 - 40367833
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||| ||||||| ||| | |||||||||||||||||    
T  40367933 aagccaagtttcattttctaagggagcaagtgaacaagggagcactgcagattgttcattgctctactaagctgcagcttgcagacatattcactaaggc 40367834  T
Q  243 a 243  Q
    |    
T  40367833 a 40367833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 10275322 - 10275424
Alignment:
Q  13 atcattaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggct 112  Q
    |||| ||||||| || |||||  ||||||| ||||||||||| || ||||||  ||| |||||||| ||||| |  ||| ||||  ||||||||||||||    
T  10275322 atcactaagaaggaaatttgagctgatgcagatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgtatcagatgaaggct 10275421  T
Q  113 tgt 115  Q
    |||    
T  10275422 tgt 10275424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 30067058 - 30067103
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctct 189  Q
    ||||||||||||||||||| || |||||||| ||||||| ||||||    
T  30067058 aagcaaagtttcattttctcagagaacaagtgaacaaagaggctct 30067103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 7330 - 7430
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||| | ||| | |||||||||||||||||    
T  7330 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgtagcttgcagacatattcactaaggc 7429  T
Q  243 a 243  Q
    |    
T  7430 a 7430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 2804 - 2904
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||||||||| |||||||| ||||| ||||| ||||| || || ||| ||||| | |||||||||||||||||| | ||| | |||||||||||||||||    
T  2804 aagcaaagttacattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgaagcttgcagacatattcactaaggc 2903  T
Q  243 a 243  Q
    |    
T  2904 a 2904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 8055216 - 8055316
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    ||||||||||||||||||| ||||| ||||| ||||| || || ||| ||||| | ||||||||||||||||||||  || | |||||||||||||||||    
T  8055216 aagcaaagtttcattttctgagggagcaagtgaacaagggagcactacagattgttcattgttctactgagctgcagtttgcagacatattcactaaggc 8055315  T
Q  243 a 243  Q
    |    
T  8055316 a 8055316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 17256078 - 17256194
Alignment:
Q  26 aagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgtggggaaacaa 125  Q
    ||||||||| ||||| | ||||| || ||||| ||||||||||| |||||||||||||| |  ||| ||   ||||| ||||||||||||||||||  ||    
T  17256078 aagtttgaattgatgtagatggaggaggagcataagattgttgagtacatctccaaactcatcaatatttggaatcacatgaaggcttgtggggaagtaa 17256177  T
Q  126 tttatgatcatcaaatt 142  Q
    ||| |||||| ||||||    
T  17256178 tttctgatcaacaaatt 17256194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 36674875 - 36674975
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  36674875 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 36674974  T
Q  243 a 243  Q
    |    
T  36674975 a 36674975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 8051700 - 8051779
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  8051700 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 8051779  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 36671359 - 36671438
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  36671359 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 36671438  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 7468170 - 7468129
Alignment:
Q  318 agtttgttacaagttagttagataatctagctaagtttgtta 359  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  7468170 agtttgttacaagttagttagatgacctagctaagtttgtta 7468129  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 35953941 - 35953862
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||| ||||||||||||||    
T  35953941 tgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaattagatgaaggcttgt 35953862  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 273
Target Start/End: Complemental strand, 35950771 - 35950641
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| |||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| || |||||||| || ||| | |||||||||||||||||    
T  35950771 aagccaagtttcattttctgagggagcaagtgaacaagggagcactgcagattgttcattgctccactgagctacagcttgcagacatattcactaaggc 35950672  T
Q  243 agttaagattgaaaggttgaacaagtttaga 273  Q
    | | ||| |||| ||||| | |||| |||||    
T  35950671 attgaaggttgacaggttcatcaagcttaga 35950641  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 730400 - 730506
Alignment:
Q  20 agaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgtgggg 119  Q
    ||||| ||||||||| ||||||| ||||| || |||||||| |||| ||| || ||||||||||| |  ||| |||| |||||||||||||||||||| |    
T  730400 agaaggaagtttgaattgatgcagatggaggaagagcaaaatattgctgaatatatctccaaactcatcaatattgtgaatcagatgaaggcttgtggag 730499  T
Q  120 aaacaat 126  Q
    || ||||    
T  730500 aagcaat 730506  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 27761224 - 27761321
Alignment:
Q  147 caaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggca 243  Q
    |||||||||||||||| ||||| ||||| ||||| || || ||  ||||| | ||||| |||||||||||||| ||| | ||||||||||||||||||    
T  27761224 caaagtttcattttctaagggagcaagtgaacaagggagcactgcagattgttcattgctctactgagctgcagcttgcagacatattcactaaggca 27761321  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 7940416 - 7940316
Alignment:
Q  144 aagcaaagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaaggc 242  Q
    |||| ||||| |||||||| ||||| ||||| ||||| || || ||  ||||| | |||||||||||||||||||| ||| | |||||||||||||||||    
T  7940416 aagccaagttccattttctgagggagcaagtgaacaagggagcacttcagattgttcattgttctactgagctgcagcttgcagacatattcactaaggc 7940317  T
Q  243 a 243  Q
    |    
T  7940316 a 7940316  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 13828432 - 13828340
Alignment:
Q  149 aagtttcattttcttagggaacaagtaaacaaaggggctctaaagatt-tccattgttctactgagctgcaacttcctgacatattcactaag 240  Q
    |||||||||||| | ||||| |||||||||||||| ||  |  ||||| ||||||| || ||||||||||||||| | |||||||||||||||    
T  13828432 aagtttcattttttgagggagcaagtaaacaaaggtgcattgtagattgtccattgctccactgagctgcaacttgcagacatattcactaag 13828340  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 7943932 - 7943853
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggcttgt 115  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||||||    
T  7943932 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggcttgt 7943853  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 27757705 - 27757780
Alignment:
Q  36 tgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaatcagatgaaggc 111  Q
    ||||||||||||||||||| || ||||||  ||| |||||||| ||||| |  ||| |||| ||||||||||||||    
T  27757705 tgatgcaaatggaagatgatcagaagatttctgagtacatctctaaactcatcaatcttgtgaatcagatgaaggc 27757780  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 59642 - 59575
Alignment:
Q  292 atatattatacatattggggtttaaaagtttgttacaagttagttagataatctagctaagtttgtta 359  Q
    ||||| ||||||| | ||||| ||||| |||||||||||||||||||  ||||| |||||||||||||    
T  59642 atataatatacatgtgggggtataaaaatttgttacaagttagttaggaaatcttgctaagtttgtta 59575  T

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