View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_high_29 (Length: 464)
Name: NF17203_high_29
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 20215861 - 20215412
Alignment:
| Q |
1 |
aatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaattttgatacttttacagctgtcaggaatactgggaacaaagacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20215861 |
aatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaattttgatacttttacagctgtcaggaatactgggaacaaagacttc |
20215762 |
T |
|
| Q |
101 |
aatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagtgtagagctttcatgggcgtctaagaagatcatcagctttattagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20215761 |
aatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagtgtagagctttcatgggcgtctaagaagatcaccagctttattagtt |
20215662 |
T |
|
| Q |
201 |
tctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatgttataataattaatggtagcggtagcgcaactgcttgtaaaatatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20215661 |
tctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatgttataataattaatcgtagcggtagcgcaactgcttgtaaaatatc |
20215562 |
T |
|
| Q |
301 |
tatatggttggaatgtgataaacaagatttgttatctataacctattctgccaccaagtttaattaagaaaagcatatcttgtgcaaactccagtccttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20215561 |
tatatggttggaatgtgataaacaagatttgttatctataacctattctgccaccaagtttaattaagaacagcatatcttgtgcaaactccagtccttt |
20215462 |
T |
|
| Q |
401 |
caacagcgccgtaaaacctgaagtgaccacaacatcccttatgcatcttg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20215461 |
caacagcgccgtaaaacctgaagtgaccacaacatcccttatgcatcttg |
20215412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 20235459 - 20235010
Alignment:
| Q |
1 |
aatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaattttgatacttttacagctgtcaggaatactgggaacaaagacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235459 |
aatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaattttgatacttttacagctgtcaggaatactgggaacaaagacttc |
20235360 |
T |
|
| Q |
101 |
aatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagtgtagagctttcatgggcgtctaagaagatcatcagctttattagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20235359 |
aatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagtgtagagctttcatgggcgtctaagaagatcaccagctttattagtt |
20235260 |
T |
|
| Q |
201 |
tctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatgttataataattaatggtagcggtagcgcaactgcttgtaaaatatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20235259 |
tctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatgttataataattaatcgtagcggtagcgcaactgcttgtaaaatatc |
20235160 |
T |
|
| Q |
301 |
tatatggttggaatgtgataaacaagatttgttatctataacctattctgccaccaagtttaattaagaaaagcatatcttgtgcaaactccagtccttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20235159 |
tatatggttggaatgtgataaacaagatttgttatctataacctattctgccaccaagtttaattaagaacagcatatcttgtgcaaactccagtccttt |
20235060 |
T |
|
| Q |
401 |
caacagcgccgtaaaacctgaagtgaccacaacatcccttatgcatcttg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235059 |
caacagcgccgtaaaacctgaagtgaccacaacatcccttatgcatcttg |
20235010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 44300373 - 44299924
Alignment:
| Q |
1 |
aatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaattttgatacttttacagctgtcaggaatactgggaacaaagacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44300373 |
aatccacttttttatcagttagtttctgctatatgctttgtctgactttagtaattttgatacttttacagctgtcaggaatactgggaacaaagacttc |
44300274 |
T |
|
| Q |
101 |
aatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagtgtagagctttcatgggcgtctaagaagatcatcagctttattagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44300273 |
aatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagtgtagagctttcatgggcgtctaagaagatcaccagctttattagtt |
44300174 |
T |
|
| Q |
201 |
tctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatgttataataattaatggtagcggtagcgcaactgcttgtaaaatatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44300173 |
tctttagtagatcatgagctttcatacacatttgtttgattgtcattttgtatgttataataattaatcgtagcggtagcgcaactgcttgtaaaatatc |
44300074 |
T |
|
| Q |
301 |
tatatggttggaatgtgataaacaagatttgttatctataacctattctgccaccaagtttaattaagaaaagcatatcttgtgcaaactccagtccttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44300073 |
tatatggttggaatgtgataaacaagatttgttatctataacctattctgccaccaagtttaattaagaacagcatatcttgtgcaaactccagtccttt |
44299974 |
T |
|
| Q |
401 |
caacagcgccgtaaaacctgaagtgaccacaacatcccttatgcatcttg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44299973 |
caacagcgccgtaaaacctgaagtgaccacaacatcccttatgcatcttg |
44299924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 39655677 - 39655789
Alignment:
| Q |
65 |
tttacagctgtcaggaatactgggaacaaagacttcaatcagagagggtagagaggattaagcaaataaaggaacactgggattcacagtgtagagcttt |
164 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||| || || ||||||||| | |||||| |||||| |||||||| | ||||||||||| || |
|
|
| T |
39655677 |
tttacagctgcaaggagtactgggaggaaagacttcagatggaaagagtagagagggtcaagcaagcaaaggagcactgggaaacgcagtgtagagcatt |
39655776 |
T |
|
| Q |
165 |
catgggcgtctaa |
177 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
39655777 |
catgggcatctaa |
39655789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University