View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_high_3 (Length: 934)

Name: NF17203_high_3
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_high_3
NF17203_high_3
[»] chr7 (11 HSPs)
chr7 (488-920)||(24909004-24909436)
chr7 (489-920)||(24894359-24894792)
chr7 (250-429)||(24909495-24909674)
chr7 (250-429)||(24895188-24895366)
chr7 (253-316)||(49060479-49060547)
chr7 (240-286)||(31002735-31002781)
chr7 (238-321)||(5369739-5369825)
chr7 (239-286)||(1417238-1417285)
chr7 (238-321)||(40530457-40530540)
chr7 (257-325)||(24895418-24895483)
chr7 (250-321)||(33894557-33894632)
[»] chr4 (12 HSPs)
chr4 (22-286)||(4071856-4072133)
chr4 (130-221)||(46859973-46860066)
chr4 (250-286)||(49219113-49219149)
chr4 (258-316)||(55437354-55437415)
chr4 (250-286)||(13949904-13949940)
chr4 (210-321)||(30207587-30207706)
chr4 (238-321)||(2980514-2980607)
chr4 (256-286)||(8130148-8130178)
chr4 (236-278)||(11842197-11842239)
chr4 (252-286)||(11917533-11917567)
chr4 (256-286)||(24091437-24091467)
chr4 (139-196)||(35743350-35743407)
[»] chr8 (12 HSPs)
chr8 (238-321)||(29973015-29973103)
chr8 (238-321)||(1561213-1561296)
chr8 (257-321)||(5290575-5290639)
chr8 (264-321)||(8536123-8536184)
chr8 (221-313)||(11059726-11059816)
chr8 (238-286)||(34770866-34770914)
chr8 (258-321)||(40868205-40868271)
chr8 (238-285)||(8062499-8062546)
chr8 (238-280)||(9834837-9834879)
chr8 (238-284)||(24558829-24558875)
chr8 (241-317)||(42597339-42597420)
chr8 (354-395)||(43208290-43208331)
[»] chr6 (12 HSPs)
chr6 (250-321)||(10452420-10452496)
chr6 (238-321)||(4006648-4006736)
chr6 (210-285)||(415279-415358)
chr6 (240-310)||(7485118-7485185)
chr6 (250-289)||(6310284-6310323)
chr6 (236-290)||(1844398-1844452)
chr6 (226-321)||(6647323-6647424)
chr6 (253-286)||(27595630-27595663)
chr6 (250-319)||(31828968-31829037)
chr6 (139-196)||(32171315-32171372)
chr6 (250-321)||(32917160-32917228)
chr6 (157-194)||(32997599-32997636)
[»] chr5 (10 HSPs)
chr5 (238-290)||(34205209-34205261)
chr5 (129-196)||(32194013-32194081)
chr5 (238-323)||(34117584-34117671)
chr5 (238-317)||(18704084-18704167)
chr5 (253-321)||(35135725-35135798)
chr5 (262-315)||(10771953-10772008)
chr5 (254-321)||(31030194-31030264)
chr5 (250-322)||(41017666-41017737)
chr5 (205-286)||(19138728-19138815)
chr5 (238-319)||(26209461-26209546)
[»] chr3 (15 HSPs)
chr3 (237-319)||(41056978-41057061)
chr3 (256-317)||(20669562-20669623)
chr3 (258-321)||(1395605-1395673)
chr3 (250-286)||(28779330-28779366)
chr3 (250-290)||(29771779-29771819)
chr3 (250-286)||(32555041-32555077)
chr3 (129-195)||(20210849-20210916)
chr3 (238-273)||(21865563-21865598)
chr3 (238-292)||(10540540-10540594)
chr3 (141-195)||(11041160-11041214)
chr3 (238-316)||(21367611-21367689)
chr3 (256-290)||(37689450-37689484)
chr3 (283-321)||(42039093-42039131)
chr3 (250-292)||(51510253-51510295)
chr3 (237-286)||(24235730-24235779)
[»] chr1 (18 HSPs)
chr1 (207-286)||(28467321-28467403)
chr1 (255-321)||(13037798-13037864)
chr1 (222-286)||(27738209-27738276)
chr1 (250-290)||(15361683-15361723)
chr1 (238-321)||(17269184-17269272)
chr1 (238-286)||(25006082-25006130)
chr1 (250-292)||(29007776-29007818)
chr1 (238-283)||(5421968-5422013)
chr1 (250-286)||(7218134-7218170)
chr1 (124-182)||(3597197-3597256)
chr1 (140-195)||(32515374-32515429)
chr1 (161-196)||(43371845-43371880)
chr1 (129-178)||(24417656-24417706)
chr1 (238-284)||(25005845-25005891)
chr1 (253-290)||(2487860-2487897)
chr1 (238-283)||(4078197-4078242)
chr1 (250-321)||(6110227-6110300)
chr1 (237-286)||(31623997-31624046)
[»] chr2 (12 HSPs)
chr2 (139-196)||(11513977-11514034)
chr2 (238-286)||(11513872-11513920)
chr2 (227-321)||(35755539-35755638)
chr2 (238-318)||(17952749-17952834)
chr2 (250-286)||(31740019-31740055)
chr2 (238-290)||(43141841-43141893)
chr2 (252-286)||(3423830-3423864)
chr2 (162-239)||(5781693-5781771)
chr2 (238-317)||(39983281-39983364)
chr2 (255-308)||(1160809-1160862)
chr2 (250-316)||(29430695-29430765)
chr2 (257-286)||(43173196-43173225)
[»] scaffold0159 (1 HSPs)
scaffold0159 (162-239)||(27025-27103)


Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 488 - 920
Target Start/End: Complemental strand, 24909436 - 24909004
Alignment:
Q  488 gttgacagtgatgaaaactaaaagctttagctataactcattgagatctgctactggagattttcatccttcaagcaaaattggtggaggaggttatgga 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  24909436 gttgacagtgatgaaaactaaaagctttagctataactcattgagatctgctacgggagattttcatccttcatgcaaaattggtggaggagggtatgga 24909337  T
Q  588 gttgtctacaaggttaggatcataaccgatgcttttttcatcttttgttttgtcttatttcttagtgcttactacctgaaattaatttgtgtcattgtca 687  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24909336 gttgtctacaaggttaggatcataaccaatgcttttttcatcttttgttttgtcttatttcttagtgcttactacccgaaattaatttgtgtcattgtca 24909237  T
Q  688 ttaacatttgtagggtgttttaagggatggtacgcaagtcgctatcaagtctctttctgtagagtctaaacaaggaactcacgaatttatgacagaaatt 787  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24909236 ttaacatttgtagggtgttttaagggatggtactcaagtcgctatcaagtctctttctgtagagtctaaacaaggaactcacgaatttatgacagaaatt 24909137  T
Q  788 gctatgatatctaatatacaacatccaaatcttgtgaaattaatcggcttctgtatcgagggtaatcatcgaatattggtgtatgagtttctcgagaata 887  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24909136 gctatgatatctaatatacaacatccaaatcttgtgaaattaatcggcttctgtatcgagggtaatcatcgaatattggtgtatgagtttctcgagaata 24909037  T
Q  888 atagcctcgcaagttctttattaggtgatttgt 920  Q
    |||||||| ||||||||||||||||||||||||    
T  24909036 atagcctcacaagttctttattaggtgatttgt 24909004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 489 - 920
Target Start/End: Complemental strand, 24894792 - 24894359
Alignment:
Q  489 ttgacagtgatgaaaactaaaagctttagctataactcattgagatctgctactggagattttcatccttcaagcaaaattggtggaggaggttatggag 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  24894792 ttgacagtgatgaaaactaaaagctttagctataactcattgagatccgctactggagattttcatccttcatgcaaaattggcggaggaggctatggag 24894693  T
Q  589 ttgtctacaaggttaggatcataaccgatgcttttttca-tcttttgtttt-gtcttatttcttagtgcttactacctgaaattaatttgtgtcattgtc 686  Q
    |||||||||||||||||||||||||| ||||||||||   ||||||||||| ||| |||| |||||||||||| ||| |||||| |||||| ||| ||||    
T  24894692 ttgtctacaaggttaggatcataaccaatgcttttttttgtcttttgtttttgtcatattgcttagtgcttaccacccgaaattcatttgtttcactgtc 24894593  T
Q  687 attaacatttgtagggtgttttaagggatggtacgcaagtcgctatcaagtctctttctgtagagtctaaacaaggaactcacgaatttatgacagaaat 786  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||    
T  24894592 attaacatttgcagggagttttaagggatggtactcaagtcgctatcaagtcactttctgtagagtcgaaacaaggaactcatgaatttatgacagaaat 24894493  T
Q  787 tgctatgatatctaatatacaacatccaaatcttgtgaaattaatcggcttctgtatcgagggtaatcatcgaatattggtgtatgagtttctcgagaat 886  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24894492 tgctatgatatctaatatacaacatccaaatcttgtgaaactaatcggcttctgtatcgagggtaatcatcgaatattggtgtatgagtttctcaagaat 24894393  T
Q  887 aatagcctcgcaagttctttattaggtgatttgt 920  Q
    |||||||| ||||||||||| |||||| ||||||    
T  24894392 aatagccttgcaagttctttgttaggtaatttgt 24894359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 250 - 429
Target Start/End: Complemental strand, 24909674 - 24909495
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcactaaaacatgataaagtcttattgatgttt 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24909674 aacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcactaaaacatgataaagtcttattgatgttt 24909575  T
Q  350 atcgtataagcgcttaattaagttgtttataaaaacaaggttttagtacttctgagttcaactttatgggacagatatcc 429  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24909574 atcgtataagcgcttaattaagttgtttatcaaaacaaggttttagtactcctgagttcaactttatgggacagatatcc 24909495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 250 - 429
Target Start/End: Complemental strand, 24895366 - 24895188
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcactaaaacatgataaagtcttattgatgttt 349  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  24895366 aacaacttatagcttatatgaaaataatttgactttactttt-gttaacgaaatagcttatagataatcactaaaatatgataaagtcttattgatgttt 24895268  T
Q  350 atcgtataagcgcttaattaagttgtttataaaaacaaggttttagtacttctgagttcaactttatgggacagatatcc 429  Q
    ||| |||||| ||||||||||||||||||| |||||||||||  |||||| || |||||||||||||||||| |||||||    
T  24895267 atcctataagagcttaattaagttgtttatcaaaacaaggttccagtactcctaagttcaactttatgggactgatatcc 24895188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 49060547 - 49060479
Alignment:
Q  253 aacttatagcttatatgaaaataatttgac-----tttactttttgttaaagaaatagcttatacataa 316  Q
    |||||||||||||||| |||||||||||||     |||| ||||||||| |||||||||||||||||||    
T  49060547 aacttatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttatacataa 49060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 31002781 - 31002735
Alignment:
Q  240 agcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  31002781 agcttatcaaaacagcttatagcttatatgaaaatattttgacttta 31002735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 5369739 - 5369825
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttact---ttttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| | |||| |||||||| |||||||||| | |||||||||| |   |||| ||| |||| |||||||||||||||||||    
T  5369739 atagcttatgaaaacagcttatagcatatatgaaaacagtttgactttattaattttttttatagaattagcttatacataagcact 5369825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 1417285 - 1417238
Alignment:
Q  239 tagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||| | |||||||||| ||||||||||||| ||||||||||||    
T  1417285 tagcttatgaaaacaacttattgcttatatgaaaacaatttgacttta 1417238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 40530457 - 40530540
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| | ||||||||||||||| | | |||| ||| || |||||  |||||| | | ||||||||||||||||||||||    
T  40530457 atagcttattaaaacaacttatagcttttgtaaaaacaatctgtctttatgttttgtcacacaaatagcttatacataagcact 40530540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 24895483 - 24895418
Alignment:
Q  257 tatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcactaaaa 325  Q
    |||||||||| ||||||||||||| ||||   |||| ||||||||||| ||| || |||||||||||||    
T  24895483 tatagcttatttgaaaataatttgtcttt---tttttttaaagaaataacttgtatataagcactaaaa 24895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 33894632 - 33894557
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactt----tactttttgttaaagaaatagcttatacataagcact 321  Q
    |||||| || |||||||||||||| | ||||||||    ||  |||||||| ||||||||||||||||||||||||    
T  33894632 aacaacataaagcttatatgaaaacagtttgacttattttatcttttgttatagaaatagcttatacataagcact 33894557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 4072133 - 4071856
Alignment:
Q  22 atgattgtgatctgaagaggtgctttctatttttagctctttattactttgtttcttgtgagcataattaggttatggttttgtcggtggtactagttga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4072133 atgattgtgatctgaagaggtgctttctatttttagctctttattactttgtttcttgtgagcataattaggttatggttttgtcggtggtactagttga 4072034  T
Q  122 taacctttttggattgattatttgaggttaactattaatataagcacttgtgagactgttttagagagctt-------------atgatttgttggtaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||     
T  4072033 taacctttttggattgattatttgaggttaactattaatataagcacttgtgagactgtttgagagagcttatgaaaacagcttatgatttgttggtaag 4071934  T
Q  209 ttgttttcagctttatccataagctctctatagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4071933 ttgttttcagctttgtccataagctctctatagcttatcataacaacttatagcttatatgaaaataatttgacttta 4071856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 46860066 - 46859973
Alignment:
Q  130 ttggattga-ttatttgaggttaactattaatataagcacttgtgagactgttttagagagcttatgatttgtt-ggtaaattgttttcagctt 221  Q
    ||||||||| ||||||||  ||| ||||| | |||||||||||||| ||||||| |||||||||||||  |||| ||||| |||||||||||||    
T  46860066 ttggattgacttatttgaacttatctattcacataagcacttgtgaaactgtttgagagagcttatgacatgttaggtaagttgttttcagctt 46859973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 49219149 - 49219113
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  49219149 aacaacttatagcttatatgaaaataatttgacttta 49219113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 55437354 - 55437415
Alignment:
Q  258 atagcttatatgaaaataatttgactttacttt---ttgttaaagaaatagcttatacataa 316  Q
    ||||||||||||||||||||||||||||| |||   |||||| |||||||||||||| ||||    
T  55437354 atagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 13949904 - 13949940
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||||||||||| ||||||||||||    
T  13949904 aacaacttatagcttatatgaaaacaatttgacttta 13949940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 30207587 - 30207706
Alignment:
Q  210 tgttttcagctt-tatccataagctctcta---tagcttatcataacaacttatagcttatatgaaaataatttg----actttactttttgttaaagaa 301  Q
    |||||||||||| | ||||||| |||||||   |||||||| | |||||||||||||||||||||||| | ||||    | |||| ||||||||| ||||    
T  30207587 tgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttgatttattttattttttgttatagaa 30207686  T
Q  302 atagcttatacataagcact 321  Q
     || | ||||||||||||||    
T  30207687 ctaacatatacataagcact 30207706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 2980514 - 2980607
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttacttt----------ttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| | ||||||||||| ||| |||||||||| |||||||||| |||          |||||| ||||||||||||||||||||||||    
T  2980514 atagcttatgagaacaacttataacttgtatgaaaatagtttgactttattttgtttcattttttgttatagaaatagcttatacataagcact 2980607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 8130178 - 8130148
Alignment:
Q  256 ttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||||||||||||||||||    
T  8130178 ttatagcttatatgaaaataatttgacttta 8130148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 11842239 - 11842197
Alignment:
Q  236 ctatagcttatcataacaacttatagcttatatgaaaataatt 278  Q
    |||||| |||| | |||||||||||||||||||||||||||||    
T  11842239 ctatagtttatgaaaacaacttatagcttatatgaaaataatt 11842197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 11917567 - 11917533
Alignment:
Q  252 caacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||| ||||||||||||||||||||||||    
T  11917567 caacttataggttatatgaaaataatttgacttta 11917533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 24091467 - 24091437
Alignment:
Q  256 ttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||||||||||||||||||    
T  24091467 ttatagcttatatgaaaataatttgacttta 24091437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 35743407 - 35743350
Alignment:
Q  139 ttatttgaggttaactattaatataagcacttgtgagactgttttagagagcttatga 196  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||   |||||||||||    
T  35743407 ttatttgagattatctactaatataagcatttgtgagactgtttagaagagcttatga 35743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 29973103 - 29973015
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttactttt-----tgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| | ||||||||||||||||| |||||||| |||||||||| |||      |||||||||||||||||||| |||||||||    
T  29973103 atagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgttaaagaaatagcttatatataagcact 29973015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 1561296 - 1561213
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| | |||||||| |||||||||| |||| ||||||| ||||  ||| |||| ||||||| ||||||||||||||||    
T  1561296 atagcttatgaaaacaacttgtagcttatattaaaacaatttgagtttatctttcgttatagaaataacttatacataagcact 1561213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 5290639 - 5290575
Alignment:
Q  257 tatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| ||||||| | ||||||| |  | ||||||| ||||||||||||||||||||||||    
T  5290639 tatagcttacatgaaaacagtttgactattttatttgttatagaaatagcttatacataagcact 5290575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 8536123 - 8536184
Alignment:
Q  264 tatatgaaaataatttgactttactttt----tgttaaagaaatagcttatacataagcact 321  Q
    |||||||||| |||||||||| ||||||    ||||| ||||||||||||||||||||||||    
T  8536123 tatatgaaaacaatttgacttcacttttattttgttatagaaatagcttatacataagcact 8536184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 11059726 - 11059816
Alignment:
Q  221 ttatccataagctctctatagcttatcataacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttataca 313  Q
    ||||||||||||| | |  ||||||| | |||||| ||||||||||||| ||| |||||||| ||| ||||||||| ||| ||||||||||||    
T  11059726 ttatccataagctgttttcagcttatgaaaacaacctatagcttatatg-aaacaatttgacctta-tttttgttatagagatagcttataca 11059816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 34770914 - 34770866
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    ||||||||| | |||||||||||||||| ||||||| ||||||||||||    
T  34770914 atagcttatgaaaacaacttatagcttaaatgaaaacaatttgacttta 34770866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 40868205 - 40868271
Alignment:
Q  258 atagcttatatgaaaataatttgactttactttttgt---taaagaaatagcttatacataagcact 321  Q
    |||||||||||||||| |||| ||||||| ||||| |   || ||||||||||||||||||||||||    
T  40868205 atagcttatatgaaaacaattcgactttattttttttatttacagaaatagcttatacataagcact 40868271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 8062546 - 8062499
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgacttt 285  Q
    ||||||||| | |||| ||||||||||||||||||| |||||||||||    
T  8062546 atagcttatgagaacatcttatagcttatatgaaaacaatttgacttt 8062499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 9834837 - 9834879
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttg 280  Q
    ||||||||| | |||||||||||||||||||||||| ||||||    
T  9834837 atagcttatgaaaacaacttatagcttatatgaaaacaatttg 9834879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 24558875 - 24558829
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactt 284  Q
    ||||||||| | |||||||||||||||||| ||||||||||| ||||    
T  24558875 atagcttatgaaaacaacttatagcttatacgaaaataatttaactt 24558829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 42597420 - 42597339
Alignment:
Q  241 gcttatcataacaacttatagcttatatgaaaataatttgactttact-----ttttgttaaagaaatagcttatacataag 317  Q
    |||||| | |||||||||||||||  ||||||| ||||| |||||| |     |||||||| ||||||||||||||||||||    
T  42597420 gcttatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagcttatacataag 42597339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 43208290 - 43208331
Alignment:
Q  354 tataagcgcttaattaagttgtttataaaaacaaggttttag 395  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  43208290 tataagcacttaattaagttgtttatacaaacaaggctttag 43208331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 10452420 - 10452496
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttact-----ttttgttaaagaaatagcttatacataagcact 321  Q
    |||||||||||||||||||||||||| ||||| |||| |     |||||||| ||||||||||||||||||||||||    
T  10452420 aacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcact 10452496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 4006736 - 4006648
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttactt-----tttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| | ||||||||||||||||||| |||| |||||||||||| ||     ||||||| ||||||| ||||| ||||||||||    
T  4006736 atagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcact 4006648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 415358 - 415279
Alignment:
Q  210 tgttttcagctttat-ccataagctctc---tatagcttatcataacaacttatagcttatatgaaaataatttgacttt 285  Q
    ||||||||||||||| ||||||| ||||   |||||||||| | |||||||||||||||||| ||||| ||||| |||||    
T  415358 tgttttcagctttattccataagttctccactatagcttataaaaacaacttatagcttatacgaaaacaatttaacttt 415279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 7485118 - 7485185
Alignment:
Q  240 agcttatcataacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttat 310  Q
    ||||||| | |||||||||||||||||||||||| ||||| ||||||   |||| || |||||||||||||    
T  7485118 agcttatgaaaacaacttatagcttatatgaaaaaaatttaacttta---tttgatacagaaatagcttat 7485185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 6310284 - 6310323
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttactt 289  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  6310284 aacaacttatagcttatatgaaaacaattagactttactt 6310323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 1844398 - 1844452
Alignment:
Q  236 ctatagcttatcataacaacttatagcttatatgaaaataatttgactttacttt 290  Q
    |||||| |||| | ||| |||| ||||||||||||||||| ||||||||||||||    
T  1844398 ctatagtttataaaaaccacttgtagcttatatgaaaatattttgactttacttt 1844452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 6647424 - 6647323
Alignment:
Q  226 cataagctctcta---tagcttatcataacaacttatagcttatatgaaaataatttgactttact---ttttgttaaagaaatagcttatacataagca 319  Q
    |||||||||||||   |||||||| | ||||  ||||| | ||||| ||| ||||||||||||| |   |||||||| ||||||| ||||||||||||||    
T  6647424 cataagctctctaagatagcttatgaaaacagattataacctatattaaagtaatttgactttattattttttgttatagaaataacttatacataagca 6647325  T
Q  320 ct 321  Q
    ||    
T  6647324 ct 6647323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 27595630 - 27595663
Alignment:
Q  253 aacttatagcttatatgaaaataatttgacttta 286  Q
    |||||| |||||||||||||||||||||||||||    
T  27595630 aacttacagcttatatgaaaataatttgacttta 27595663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 31829037 - 31828968
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagca 319  Q
    |||| |||||| |||||||||||||| ||||| |||| |||||| || ||||| ||||||| | ||||||    
T  31829037 aacagcttataacttatatgaaaatagtttgattttattttttgatatagaaacagcttatgcgtaagca 31828968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 32171315 - 32171372
Alignment:
Q  139 ttatttgaggttaactattaatataagcacttgtgagactgttttagagagcttatga 196  Q
    |||||| || |||| |||| | ||||||||||| |||||||||| |||||||||||||    
T  32171315 ttatttcagcttaagtattgacataagcacttgcgagactgtttgagagagcttatga 32171372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 32917228 - 32917160
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcact 321  Q
    |||||||||||||||||||||||||   || | ||||  ||||| ||  |||||||||||||||||||||||    
T  32917228 aacaacttatagcttatatgaaaat---tttattttatcttttgctattgaaatagcttatacataagcact 32917160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 32997636 - 32997599
Alignment:
Q  157 taatataagcacttgtgagactgttttagagagcttat 194  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  32997636 taatataagcacttgtgagaccgtttgagagagcttat 32997599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 34205261 - 34205209
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttacttt 290  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  34205261 atagcttatgaaaacaacttatagcttatataaaaataatttgactttacttt 34205209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 32194013 - 32194081
Alignment:
Q  129 tttggattga-ttatttgaggttaactattaatataagcacttgtgagactgttttagagagcttatga 196  Q
    |||||||||| ||||||||| ||||||| | ||||||| ||||||||||||||| |||||| |||||||    
T  32194013 tttggattgacttatttgagcttaactaatgatataagaacttgtgagactgttatagagaacttatga 32194081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 34117584 - 34117671
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatt--tgactttactttttgttaaagaaatagcttatacataagcactaa 323  Q
    ||||||||| | | |||||||||||||||||| |||||||   | | ||||  |||||||||||||||| ||||||||||||||||||    
T  34117584 atagcttatgaaagcaacttatagcttatatgtaaataataccttattttatcttttgttaaagaaataacttatacataagcactaa 34117671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 18704084 - 18704167
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttact----ttttgttaaagaaatagcttatacataag 317  Q
    ||||||||| | ||||||||||||||||||| ||||||  ||||||||| |    |||||||| ||||||| ||||||||||||    
T  18704084 atagcttatgaaaacaacttatagcttatataaaaatagcttgactttatttatcttttgttatagaaataacttatacataag 18704167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 35135725 - 35135798
Alignment:
Q  253 aacttatagcttatatgaaaataatttgactttact-----ttttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||||||||||||||||| |||||||||| |     |||||||| ||||||| ||||||||||| ||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacact 35135798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 10771953 - 10772008
Alignment:
Q  262 cttatatgaaaataatttgactttac--tttttgttaaagaaatagcttatacata 315  Q
    |||||||||||| ||||| |||||||  ||||||||| ||||||||||||||||||    
T  10771953 cttatatgaaaacaatttaactttacattttttgttatagaaatagcttatacata 10772008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 31030194 - 31030264
Alignment:
Q  254 acttatagcttatatgaaaataatttgactttactt---tttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||||||||||| || || ||||||||| ||   ||||||| | ||||||||||||||||||||||    
T  31030194 acttatagcttatatgataacaacttgactttatttaaatttgttataaaaatagcttatacataagcact 31030264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 41017737 - 41017666
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcacta 322  Q
    |||||||||||||||||| ||||||  |||||||||| |||||||||  ||||||| ||| ||||||| ||||    
T  41017737 aacaacttatagcttataggaaaatggtttgacttta-tttttgttatggaaatagtttacacataaggacta 41017666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 19138728 - 19138815
Alignment:
Q  205 taaattgttttcagctt-tatccataagctctc-----tatagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    ||||||||||||||||| | |||||||||||||      ||||||||| | ||||||||||||||||| |||||| ||||||| ||||    
T  19138728 taaattgttttcagcttatttccataagctctccatataatagcttatgaaaacaacttatagcttatctgaaaacaatttgaattta 19138815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 26209461 - 26209546
Alignment:
Q  238 atagcttatcataacaacttatagcttatat-gaaaataatttgactttacttt---ttgttaaagaaatagcttatacataagca 319  Q
    ||||||||| | |||| |||||||||||||| ||||| |||| ||||||| |||   |||||| ||||||| ||||||||||||||    
T  26209461 atagcttatgaaaacagcttatagcttatattgaaaacaattggactttattttatcttgttatagaaataacttatacataagca 26209546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 41057061 - 41056978
Alignment:
Q  237 tatagcttatcataacaacttatagcttatatgaaaataatttgacttta-ctttttgttaaagaaatagcttatacataagca 319  Q
    |||||||||| | |||||||||||||||||||||||| || || | |||| ||||||  |||||||||||||||||| ||||||    
T  41057061 tatagcttatgaaaacaacttatagcttatatgaaaacaaattaattttatcttttttctaaagaaatagcttatacttaagca 41056978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 20669623 - 20669562
Alignment:
Q  256 ttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataag 317  Q
    |||||||||||||||||| ||||| ||||   ||||||||| ||||||||||||||||||||    
T  20669623 ttatagcttatatgaaaacaatttaacttgtatttttgttatagaaatagcttatacataag 20669562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 1395673 - 1395605
Alignment:
Q  258 atagcttatatgaaaataatttgactttact-----ttttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||||||||||||||||||||||| |     |||||||| |||||||||||||||||| |||||    
T  1395673 atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatgcact 1395605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 28779366 - 28779330
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28779366 aacaacttatagcttatatgaaaatagtttgacttta 28779330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 29771819 - 29771779
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttacttt 290  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  29771819 aacaacttatagtttatatgaaaataatttcactttacttt 29771779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 32555041 - 32555077
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||||| ||||||||||||||||||    
T  32555041 aacaacttatagcttataggaaaataatttgacttta 32555077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 20210849 - 20210916
Alignment:
Q  129 tttggattgatt-atttgaggttaactattaatataagcacttgtgagactgttttagagagcttatg 195  Q
    |||||||||||| ||||||||||| ||| | | |||| ||||||||||||||||| ||||| ||||||    
T  20210849 tttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatg 20210916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 21865598 - 21865563
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaa 273  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21865598 atagcttatcaaaacaacttatagcttatatgaaaa 21865563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 10540540 - 10540594
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttacttttt 292  Q
    ||||||||| | |||||||||||| |||||| ||| ||||||||||||| |||||    
T  10540540 atagcttatgaaaacaacttatagtttatataaaattaatttgactttatttttt 10540594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 11041160 - 11041214
Alignment:
Q  141 atttgaggttaactattaatataagcacttgtgagactgttttagagagcttatg 195  Q
    ||||||| ||| ||| ||| ||||||||||||| |||||||| ||||||||||||    
T  11041160 atttgagcttatctactaagataagcacttgtgggactgtttgagagagcttatg 11041214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 21367689 - 21367611
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataa 316  Q
    ||||||||| | |||||||||||  ||||| ||||| ||||| |||||| |||||| || ||| ||| |||||||||||    
T  21367689 atagcttatgaaaacaacttatacattatacgaaaacaatttaactttattttttgctatagagatatcttatacataa 21367611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 37689450 - 37689484
Alignment:
Q  256 ttatagcttatatgaaaataatttgactttacttt 290  Q
    |||||||||||||||||||||||| ||||||||||    
T  37689450 ttatagcttatatgaaaataatttaactttacttt 37689484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 42039131 - 42039093
Alignment:
Q  283 tttactttttgttaaagaaatagcttatacataagcact 321  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  42039131 tttattttttgttacagaaatagcttatacataagcact 42039093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 51510253 - 51510295
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttacttttt 292  Q
    |||||||||||| |||||| |||||||||| ||||||||||||    
T  51510253 aacaacttatagtttatatcaaaataattttactttacttttt 51510295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 24235730 - 24235779
Alignment:
Q  237 tatagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||| | |||||||||||||||||||  ||||| ||||||||||    
T  24235730 tatagcttatgaaaacaacttatagcttatattcaaatagtttgacttta 24235779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 28467321 - 28467403
Alignment:
Q  207 aattgttttcagctttatcca-taagctctcta--tagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||| ||||||||||| | || |||||||||||  |||||||| | |||||||| ||||||||||||||||||||||||||||    
T  28467321 aatttttttcagcttttttcaataagctctctagctagcttatgaaaacaacttgtagcttatatgaaaataatttgacttta 28467403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 13037864 - 13037798
Alignment:
Q  255 cttatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| |  ||||| |||||||||||||  |||||||| ||||||||||||||||||||||||    
T  13037864 cttatagctgacttgaaactaatttgactttatcttttgttatagaaatagcttatacataagcact 13037798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 27738209 - 27738276
Alignment:
Q  222 tatccataagctctc---tatagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||   |||||||||| | ||||| |||||||||||||||||| ||||||||||||    
T  27738209 tatccataagctctcctgtatagcttatgaaaacaaattatagcttatatgaaaacaatttgacttta 27738276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 15361723 - 15361683
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttacttt 290  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  15361723 aacagcttatagcttatatgaaaataatttgactttacttt 15361683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 17269272 - 17269184
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttact-----ttttgttaaagaaatagcttatacataagcact 321  Q
    ||||||||| | |||||||||| ||||||||||||| |||||||||||| |     |||||||  ||||||| ||||||||||||||||    
T  17269272 atagcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctagaaataacttatacataagcact 17269184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 25006082 - 25006130
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||||    
T  25006082 atagcttatgaaaacaacttatagcttatatgaaaacaatttgacttta 25006130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 29007776 - 29007818
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttacttttt 292  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  29007776 aacaacttatagcttatatgaaaatagtttgactttaattttt 29007818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 5421968 - 5422013
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgact 283  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||    
T  5421968 atagcttatcaaaacaacttatagcttataagaaaacaatttgact 5422013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 7218134 - 7218170
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||||||||||| ||||||||||||    
T  7218134 aacaacttatagcttatatgaaaacaatttgacttta 7218170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 3597197 - 3597256
Alignment:
Q  124 acctttttggattga-ttatttgaggttaactattaatataagcacttgtgagactgttt 182  Q
    |||| |||||||||| ||||||||||||| ||| | |||||| |||||||||||||||||    
T  3597197 acctgtttggattgacttatttgaggttatctaatgatataaccacttgtgagactgttt 3597256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 32515374 - 32515429
Alignment:
Q  140 tatttgaggttaactattaatataagcacttgtgagactgttttagagagcttatg 195  Q
    |||||||| ||| ||| ||| ||||||||||||||||||||||  |||||||||||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatg 32515429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 43371845 - 43371880
Alignment:
Q  161 ataagcacttgtgagactgttttagagagcttatga 196  Q
    |||||||||||||||||||||| |||||||||||||    
T  43371845 ataagcacttgtgagactgtttgagagagcttatga 43371880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 24417656 - 24417706
Alignment:
Q  129 tttggattga-ttatttgaggttaactattaatataagcacttgtgagact 178  Q
    |||||||||| ||||||||| ||| ||||||||||||| ||||||||||||    
T  24417656 tttggattgacttatttgagtttatctattaatataagtacttgtgagact 24417706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 25005845 - 25005891
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactt 284  Q
    ||||||||| | |||||||||||||||||||||||| || |||||||    
T  25005845 atagcttatgaaaacaacttatagcttatatgaaaacaagttgactt 25005891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 2487860 - 2487897
Alignment:
Q  253 aacttatagcttatatgaaaataatttgactttacttt 290  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  2487860 aacttatagcttatatccaaataatttgactttacttt 2487897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 4078197 - 4078242
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgact 283  Q
    ||||||||| | |||||||||||| ||||||||||||| |||||||    
T  4078197 atagcttatgaaaacaacttatagattatatgaaaatagtttgact 4078242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 6110227 - 6110300
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttactttt-tgttaa-agaaatagcttatacataagcact 321  Q
    ||||||||||| |||| ||||||| ||||||| |||  |||| |||| | ||||||||||||||||||||||||    
T  6110227 aacaacttataccttaaatgaaaacaatttgaatttgtttttctgtttatagaaatagcttatacataagcact 6110300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 31624046 - 31623997
Alignment:
Q  237 tatagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||| ||||||||||||||| ||||| || | ||||||||||||    
T  31624046 tatagcttatgataacaacttatagcatatatcaatacaatttgacttta 31623997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 11514034 - 11513977
Alignment:
Q  139 ttatttgaggttaactattaatataagcacttgtgagactgttttagagagcttatga 196  Q
    ||||||||| ||| ||| ||  ||||||||||||||||||||||||||||||||||||    
T  11514034 ttatttgagattatctactagcataagcacttgtgagactgttttagagagcttatga 11513977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 11513920 - 11513872
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgacttta 286  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||||    
T  11513920 atagcttatgaaaacaacttatagcttatatgaaaacaatttgacttta 11513872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 35755539 - 35755638
Alignment:
Q  227 ataagctctctatagcttatcataacaacttatagcttatatgaaaataatttgacttta----ctttttg-ttaaagaaatagcttatacataagcact 321  Q
    |||||||||  ||| ||||| | |||||||||||||||| ||||||| ||||||||||||    || |||| ||| ||||||||||||||||||| ||||    
T  35755539 ataagctcttcataacttatgaaaacaacttatagcttacatgaaaacaatttgactttattttctatttgattatagaaatagcttatacataaacact 35755638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 17952749 - 17952834
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttact-----ttttgttaaagaaatagcttatacataagc 318  Q
    ||||||||| | |||| ||| ||||||||||||||||| |||||||||| |     |||||||| |||||||||||||| ||||||    
T  17952749 atagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagc 17952834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 31740019 - 31740055
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||||||||||||||||||| ||||||||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgacttta 31740055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 43141893 - 43141841
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttacttt 290  Q
    ||||||||| | |||| ||||||||||||||| ||| ||||||||||||||||    
T  43141893 atagcttatgaaaacatcttatagcttatatggaaacaatttgactttacttt 43141841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 3423830 - 3423864
Alignment:
Q  252 caacttatagcttatatgaaaataatttgacttta 286  Q
    |||||||||| ||||||||||||||||||||||||    
T  3423830 caacttataggttatatgaaaataatttgacttta 3423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 5781771 - 5781693
Alignment:
Q  162 taagcacttgtgagactgttttagagagcttatgatttgttggtaaattgttttcagctt-tatccataagctctctat 239  Q
    ||||||||||||| |||||||  ||||||||||||  |||   |||| |||||||||||| | ||||||||||||||||    
T  5781771 taagcacttgtgacactgtttgcgagagcttatgacatgtgcataaactgttttcagcttatttccataagctctctat 5781693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 39983364 - 39983281
Alignment:
Q  238 atagcttatcataacaacttatagcttatatgaaaataatttgactttactt----tttgttaaagaaatagcttatacataag 317  Q
    ||||||||| | ||||||||||||||||||||||||| |||| | |||| ||    ||||||| | |||||||||||| |||||    
T  39983364 atagcttatgaaaacaacttatagcttatatgaaaattattttattttattttacctttgttacaaaaatagcttatatataag 39983281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 1160809 - 1160862
Alignment:
Q  255 cttatagcttatatgaaaataatttgactttactttttgttaaagaaatagctt 308  Q
    ||||||||||||||||||||| |||||||||| ||| || || ||||| |||||    
T  1160809 cttatagcttatatgaaaatagtttgactttattttatgctatagaaacagctt 1160862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 29430765 - 29430695
Alignment:
Q  250 aacaacttatagcttatatgaaaataatttgactttactt----tttgttaaagaaatagcttatacataa 316  Q
    |||| ||||||||||||| ||||| | |||||||||| ||    ||||||| |||||||||||||||||||    
T  29430765 aacagcttatagcttataagaaaacagtttgactttatttaacttttgttatagaaatagcttatacataa 29430695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 43173225 - 43173196
Alignment:
Q  257 tatagcttatatgaaaataatttgacttta 286  Q
    ||||||||||||||||||||||||||||||    
T  43173225 tatagcttatatgaaaataatttgacttta 43173196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 27103 - 27025
Alignment:
Q  162 taagcacttgtgagactgttttagagagcttatgatttgttggtaaattgttttcagctt-tatccataagctctctat 239  Q
    ||||||||||||| |||||||  ||||||||||||  |||   |||| |||||||||||| | ||||||||||||||||    
T  27103 taagcacttgtgacactgtttgcgagagcttatgacatgtgcataaactgttttcagcttatttccataagctctctat 27025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University