View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_31 (Length: 455)
Name: NF17203_high_31
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 781853 - 781409
Alignment:
| Q |
1 |
aatacgagaaaattaaactagaagttactcttnnnnnnnnntcagcaagaattaattgcataatgtggatcttacaagtctcatacaaagtataagtatc |
100 |
Q |
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| T |
781853 |
aatacgagaaaattaaactagaagttactcttaaaaaaaaatcagcaagaattaattgcataatgtggaccttacaagtctcatacaaagtataagtatt |
781754 |
T |
|
| Q |
101 |
gctaagatcacatcatatccgtttcacaataagaatgacaaatatttaccatatctactcttaaatatttaccatctacccttatgttgaaccaaacata |
200 |
Q |
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| T |
781753 |
gccaagatcacatcatatccgtttcacaataagaatgacaaatatttaccatatctactcttaaatatttaccatctacccttatgttgaaccaaacata |
781654 |
T |
|
| Q |
201 |
caatgacatactagagaccttaaaaagtgtctcaataattttataaaatcttattgatcaactataagattaagatatatttaaatggttatatcataac |
300 |
Q |
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| T |
781653 |
caatgacatactagagaccttaaaaagtgtctcaataattttataaaatcttattgatcaactatgagattaagatatatttaaatggttatatcataac |
781554 |
T |
|
| Q |
301 |
ttacaatcttccttcattcccataatatatgattagtttcacgttaactatttattctcaaaa------------tatatttgtttcgaagagtacggta |
388 |
Q |
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| T |
781553 |
ttacaatcttccttcattcccataatatatgattagtttcacggtaactacttattctcaaaatttggttttatttttatttgtttcgaagagta-ggta |
781455 |
T |
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| Q |
389 |
aaactacacacactaaatgttgaaaaatttagaattaaagttctaa |
434 |
Q |
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| T |
781454 |
aaactacacacactaaatattgaaaaatttagaattaaagttctaa |
781409 |
T |
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