View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_34 (Length: 446)
Name: NF17203_high_34
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 40 - 430
Target Start/End: Original strand, 13044289 - 13044666
Alignment:
| Q |
40 |
aagataaaatgactcatgtataggtgaaatccgcttaagcactcaagtgagaaaactccattgcggatgttctaaaactcctttaacaatagatcttgca |
139 |
Q |
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| T |
13044289 |
aagataaaatgactcatgtatacgtgaaatccgcttaagcactcaagtgagaaaacttcattgcggatgttctaaaactcttttaacaatagatcttgca |
13044388 |
T |
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| Q |
140 |
aatttattttttgtgtctacgtcttttattattttgtcaagtagcataatgactagaatttcatctctaagataaataagttgagattcaatgtttgaac |
239 |
Q |
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| T |
13044389 |
aatttatcttttgtgtctac--------------tatcaagtagcataatgactaaaatttcatctctaagataaataagttgagattcaatgtttgaac |
13044474 |
T |
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| Q |
240 |
tccaattcttacataaaatgtatctaccaactgagatatgatatctatgtcttttattaattgattcatctatatcttttaagaaatgaagaagggattg |
339 |
Q |
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| T |
13044475 |
tctaatccttatataaaatgtatctaccagccgagatttgatatctatgtcttttattaattgattcatctatatcttttaagaaatgaagaagggattg |
13044574 |
T |
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| Q |
340 |
atcaagtctataagaatacactattagagggagatgacggttcatttttgtttcaactcacaattgttagtt-caaatggactagaactatt |
430 |
Q |
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| T |
13044575 |
atcaagtctataagaatacactattagagggagatgacggttcatttttgtttcaactcacaattgttagttacaaatggactagaactatt |
13044666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 8981279 - 8981215
Alignment:
| Q |
106 |
atgttctaaaactcctttaacaatagatcttgcaaatttattttttgtgtctacgtcttttatta |
170 |
Q |
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| T |
8981279 |
atgttctaaaactcttttaacaatagatctcgccaatacatcttttgtgtctaggtcgtttatta |
8981215 |
T |
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