View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_35 (Length: 436)
Name: NF17203_high_35
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 36288737 - 36288336
Alignment:
| Q |
17 |
gttcaatttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggtaggccttc |
116 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288737 |
gttcaatttgaggttttgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggtaggccttc |
36288638 |
T |
|
| Q |
117 |
aatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaaga-gat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
36288637 |
aatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaagaggtt |
36288538 |
T |
|
| Q |
216 |
ttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagaatgtg |
315 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36288537 |
ttgtctccctttttggctaatatgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggagacattgctatgtgcaaagaagaatgtg |
36288438 |
T |
|
| Q |
316 |
gatccatggctgctattttctgaattacttggcaatgtctctctgcttataaggtctatataaaatatagggggattctggctcctatagcataatctac |
415 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36288437 |
gatccaaggctgctattttctgaattacttggcaatatctctctgcttataaggtctatataaaatacagggggattctggctcctatagcataatctac |
36288338 |
T |
|
| Q |
416 |
aa |
417 |
Q |
| |
|
|| |
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|
| T |
36288337 |
aa |
36288336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 35036740 - 35037127
Alignment:
| Q |
9 |
gagaagaagttcaatttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggt |
108 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |
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| T |
35036740 |
gagaagaagttcaacttgaggctgtgtttgatccatagctgtcatgatgagtggacctaaagagaatgagacatctgaagtggtttcagcaccaaatgga |
35036839 |
T |
|
| Q |
109 |
aggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaaga |
208 |
Q |
| |
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|| || | ||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||| |||||| ||||||||||||||| |||| ||||||| |
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| T |
35036840 |
agaccatgaatgtgaggaacattgagagggtaaaaagtgatgagatttggataaaggttgaattgttctaatttggtttgtgttttcgtgggaatgaaga |
35036939 |
T |
|
| Q |
209 |
aagaga-tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaaga |
307 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35036940 |
aagagattttgtgtccccttttggctaatttgtttgagagatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatgtgcaaaga |
35037039 |
T |
|
| Q |
308 |
agaatgtggatccatggctgctattttctgaattacttggcaatgtctctctgcttataaggtctatataaaatatagggggattctgg |
396 |
Q |
| |
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||| ||| |||||||||||| || |||||| ||||| ||||||| |||||||||||||||||||||||||||| || || ||||||| |
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|
| T |
35037040 |
agatggtgactccatggctgct-ttgtctgaactacttagcaatgtttctctgcttataaggtctatataaaataaagaggaattctgg |
35037127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 35009197 - 35008874
Alignment:
| Q |
5 |
gagtgagaagaagttcaatttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaa |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
35009197 |
gagtgagaagaagttcaacttgaggttgagtttgatccatagctgtcatgatgagtggacctaaagagaatgagacatctgaagtggtttcagcaccaaa |
35009098 |
T |
|
| Q |
105 |
gggtaggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatg |
204 |
Q |
| |
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|| || || | ||| ||||||||||||||||||||||| ||||| | ||||| ||||||||||||| |||||| |||||||||||||||||||| ||| |
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|
| T |
35009097 |
tggaagaccatgaatatgaggaacattgagagggtaaaaagtgattaaatttggataaaggttgaattgttctaatttggtttgtgttttcttgggaatg |
35008998 |
T |
|
| Q |
205 |
aagaaagaga-tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgca |
303 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35008997 |
aagaaagagattttgtgtccccttttggctaatttgtttgagagatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatgtgca |
35008898 |
T |
|
| Q |
304 |
aagaagaatgtggatccatggctg |
327 |
Q |
| |
|
||||||| ||| |||||||||| |
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|
| T |
35008897 |
aagaagatggtgactccatggctg |
35008874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 79 - 306
Target Start/End: Complemental strand, 35026387 - 35026159
Alignment:
| Q |
79 |
acatctgaagtggtttcagcgccaaagggtaggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttcta |
178 |
Q |
| |
|
|||||||||| |||||||| ||| ||| || || ||||||||||||||||||||||||||||| ||||| || ||||||| ||||||| | || || |
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|
| T |
35026387 |
acatctgaagatgtttcagcaccatcgggaagaccatcaatgtgaggaacattgagagggtaaaaagtgatgagatttgggtttaggttgagatgttgta |
35026288 |
T |
|
| Q |
179 |
acttggtttgtgttttcttggggatgaagaaagaga-tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgc |
277 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | |||||| || ||||| ||||||||||| ||||||||||||||||| | | ||||||||| || |
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|
| T |
35026287 |
acttggtttgtgtttttttggggatgaagaatgatattttgtgacctttttttgctaatttgttggagaggtgaagatatggggtgaagtgtcccatagc |
35026188 |
T |
|
| Q |
278 |
aaaccatggaaacattgctatgtgcaaag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
35026187 |
aaaccatggaaacattgctatgtgcaaag |
35026159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 35019417 - 35019518
Alignment:
| Q |
231 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagaatgtggatccatggctgcta |
330 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||| | | |||||| |||||| |
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|
| T |
35019417 |
gctaatttgttggagaagtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgtgcaaaggagaaggagcatccattactgcta |
35019516 |
T |
|
| Q |
331 |
tt |
332 |
Q |
| |
|
|| |
|
|
| T |
35019517 |
tt |
35019518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 35033243 - 35033168
Alignment:
| Q |
231 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
35033243 |
gctaacttgtttgagaggtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgtgtaaag |
35033168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 34998904 - 34998978
Alignment:
| Q |
232 |
ctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
306 |
Q |
| |
|
|||||||||| |||||| | | | ||||| || ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34998904 |
ctaatttgttagagaggcggataaatggagttgagtgtcccatagcaaaccatggaaacattgctatgtgcaaag |
34998978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 35012391 - 35012490
Alignment:
| Q |
231 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaagaagaatgtggatccatggctgcta |
330 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | | |||||||| ||||||||||||||||||| ||| |||| || || | | | |||||||||||||| |
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|
| T |
35012391 |
gctaatttgtttgagaagtggagatatggggtgaaatgtcccatagcaaaccatggaaacattgatatatgcataggaggaagagcatccatggctgcta |
35012490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 30595238 - 30595329
Alignment:
| Q |
215 |
tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
306 |
Q |
| |
|
|||||| || ||||| |||| |||||||| || ||||| ||||| || |||| |||||||||||||||||| ||||||||||||| |||| |
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|
| T |
30595238 |
tttgtgacctttttttgctagtttgtttgctagatgaaggaatggagtttggtggcccattgcaaaccatggatacattgctatgtgtaaag |
30595329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 30612586 - 30612677
Alignment:
| Q |
215 |
tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
306 |
Q |
| |
|
|||||| || ||||| |||| |||||||| || ||||| ||||| || |||| |||||||||||||||||| ||||||||||||| |||| |
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|
| T |
30612586 |
tttgtgacctttttttgctagtttgtttgctagatgaaggaatggagtttggtggcccattgcaaaccatggatacattgctatgtgtaaag |
30612677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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