View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_high_4 (Length: 923)
Name: NF17203_high_4
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 854; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 854; E-Value: 0
Query Start/End: Original strand, 17 - 914
Target Start/End: Complemental strand, 38118834 - 38117937
Alignment:
| Q |
17 |
aaaatagatatcttgattgtgaatgcaccacttggctagcttcatttgattgcttacatatttgcccaagttggtgtggtcctcatagttgaatttggaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118834 |
aaaatagatatcttgattgtgaatgcaccactgggctagcttcatttgattgcttacatatttgcccaagttggtgtggtcctcatagttgaatttggaa |
38118735 |
T |
|
| Q |
117 |
agcattgaaataacaatttttcttttatgaagtcgcatttagttctttgaatataagaatgtaaatcgatctgttcgatgagaaaggttgagtggcaaca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
38118734 |
ggcattgaaataacaatttttcttttatgaagtcacatttagttctttgaatataagaatgtaaattgacctgttcgatgagaaaggttgagtggcaaca |
38118635 |
T |
|
| Q |
217 |
gtggcagagaatgtttcgatgtgatggtaatagttttcattttgaatttaaaagccttgtgattgtcatgatgcaacaatagtcgtaaaaagatgtttta |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118634 |
gtggccgagaatgtttcgatgtgatggtaatagttttcattttgaatttaaaagccttgtgattgtcatgatgcaacaatagtcgtaaaaagatgtttta |
38118535 |
T |
|
| Q |
317 |
gcacagacaattaattgatgttcttaaaattaaagggccaaaatacatacttcgtaattttgaggagtaaattgtccgatccttacactttgaagatcaa |
416 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38118534 |
gcacagacaattaattgatgttgttaaaattaaagggccaaaatacatacttcgtaattttgaggactaaattgtccgatccttacactttgaagatcaa |
38118435 |
T |
|
| Q |
417 |
tttagagattcactaataatcttatcttttcccttctaaatcatatctatgagtattctttcaatcggaactgaaccttgctgatgaaagactgaccaaa |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118434 |
attagagattcactaataatcttatcttttcccttctaaatcatatctatgagtattctttcaatcggaactgaaccttgctgatgaaagactgaccaaa |
38118335 |
T |
|
| Q |
517 |
tctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactctgaaggacaggctctgaccatttagatagctcaagctt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118334 |
tctccaactagagggtaccacattaatagctgtacgagtctttccattactgagttggactctgaaggacaggctctgaccatttagatagctcaagctt |
38118235 |
T |
|
| Q |
617 |
tgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaactttggagatatcccctgccccctacattgctt |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118234 |
tgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaactttggagatatcccctgccccctacattgctt |
38118135 |
T |
|
| Q |
717 |
ataagcactagttcagaatagtctctcccattgaatatatagaatttccaaataactttttcccacttttaaagatgctgacttagtgaattaagtgaac |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118134 |
ataagcactagttcagaatagtctctcccattgaatatatagaatttccaaataactttttcccacttttaaagatgctgacttagtgaattaagtgaac |
38118035 |
T |
|
| Q |
817 |
cttggtagaaattataaattacaatacagtagtaaattgaaatgaaatggtacaaccgctcaaaaattcaactgggtctgtcgatcgtgtatattcat |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38118034 |
cttggtagaaattataaattacaatacagtagtaaattgaaatgaaatggtacaaccgctcaaaaattcaactgagtctgtcgatcgtgtatattcat |
38117937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 459 - 750
Target Start/End: Complemental strand, 38166028 - 38165735
Alignment:
| Q |
459 |
atatctatgagtattctttcaatcggaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctt |
558 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
38166028 |
atatttatgagtatcctttcaatcagaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaacagccgtgagagtctt |
38165929 |
T |
|
| Q |
559 |
tccattactgagttggactctgaaggacaggctctgaccatttagatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagttt |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| | |||||||||| |
|
|
| T |
38165928 |
tccattactgagttggactctgaaggacagactctgaccatttagatagcttaagctttgccagttagcaccccaatttcttgacatagattcccagttt |
38165829 |
T |
|
| Q |
659 |
ttcattttagaccctttgatccaaactttggagatatcccctg--ccccctacattgcttataagcactagttcagaatagtctctcccattga |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
38165828 |
ctcattttagaccctttgatccaaactttggagatatcacctgctccccctacattgcttataagcactagttcaaaatagtctcttccattga |
38165735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 754 - 847
Target Start/End: Complemental strand, 38161699 - 38161606
Alignment:
| Q |
754 |
tatagaatttccaaataactttttcccacttttaaagatgctgacttagtgaattaagtgaaccttggtagaaattataaattacaatacagta |
847 |
Q |
| |
|
||||||||| |||| |||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38161699 |
tatagaattaccaattaactttttccctcttataaagatactgaattagtgaattaagtgaaccttggtagaaattataaattacaatacagta |
38161606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 479 - 687
Target Start/End: Original strand, 45511805 - 45512013
Alignment:
| Q |
479 |
aatcggaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactc |
578 |
Q |
| |
|
|||| ||||||||| || || || ||||||| ||||||||||| | || ||| | |||||||||||||| |||||||| ||||| ||||||| | || |
|
|
| T |
45511805 |
aatcagaactgaacgttacttttgtaagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattc |
45511904 |
T |
|
| Q |
579 |
tgaaggacaggctctgaccatttagatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgat |
678 |
Q |
| |
|
| || || | ||| |||||||| |||||||| | ||||||||| ||| ||||||||||| ||||||| | |||||| || ||| |||| || ||||| || |
|
|
| T |
45511905 |
taaatgataagctttgaccattgagatagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttat |
45512004 |
T |
|
| Q |
679 |
ccaaacttt |
687 |
Q |
| |
|
||||||||| |
|
|
| T |
45512005 |
ccaaacttt |
45512013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 504 - 687
Target Start/End: Original strand, 45506370 - 45506553
Alignment:
| Q |
504 |
aagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactctgaaggacaggctctgaccatttag |
603 |
Q |
| |
|
||||||| ||||||||||| | || ||| | |||||||||||||| |||||||| ||||| ||||||| | ||| || || | ||| |||||||| || |
|
|
| T |
45506370 |
aagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattctaaatgataagctttgaccattgag |
45506469 |
T |
|
| Q |
604 |
atagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaacttt |
687 |
Q |
| |
|
|||||| | ||||||||| ||| ||||||||||| ||||||| | |||||| || ||| |||| || ||||| ||||||||||| |
|
|
| T |
45506470 |
atagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttatccaaacttt |
45506553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 12516076 - 12516131
Alignment:
| Q |
188 |
tgttcgatgagaaaggttgagtggcaacagtggcagagaatgtttcgatgtgatgg |
243 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||||||| |||| |||||||| |
|
|
| T |
12516076 |
tgttcgatgagaacggttgagtggcaacagcggtagagaatgcttcggtgtgatgg |
12516131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 12731754 - 12731703
Alignment:
| Q |
195 |
tgagaaaggttgagtggcaacagtggcagagaatgtttcgatgtgatggtaa |
246 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
12731754 |
tgagaacggttgagtagcaacagcggcagagaatgtttcggtgtgacggtaa |
12731703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 24647176 - 24647238
Alignment:
| Q |
184 |
gatctgttcgatgagaaaggttgagtggcaacagtggcagagaatgtttcgatgtgatggtaa |
246 |
Q |
| |
|
||||| |||| |||||| |||||||| ||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
24647176 |
gatcttttcggtgagaacggttgagtagcaacagtgacagagaatgttctgatgtgacggtaa |
24647238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University