View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_40 (Length: 415)
Name: NF17203_high_40
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 152 - 402
Target Start/End: Complemental strand, 34796986 - 34796736
Alignment:
| Q |
152 |
cgtaaaagcaagttcttcaattgcttcctgtttgatttgctgccagggctttgcacgttcctcttcttcctcttcatatttacgcttgcaagaagcacac |
251 |
Q |
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| T |
34796986 |
cgtaaaagcaagttcttcaattgcttcctgtttgatttgctgccagggctttgcacgttcctcttcttcctcttcatatttacgcttgcaagaagcacac |
34796887 |
T |
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| Q |
252 |
catccatcggcatagctgcaaaaacaggtattctccatcctttctttcttataggctgaaaaggtaaagaaagtaaacataataggttaagaaagttaaa |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34796886 |
catccatcggcatagctgcaaaaacaggtattctccatcctttctttcttataggctgaaaaggtaaagaaagtaaacataataggttaagaaagttaaa |
34796787 |
T |
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| Q |
352 |
caatataataatcaatagttaagctaagattagcatgaacatgatgaaaat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34796786 |
caatataataatcaatagttaagctaagattagcatgaacatgatgaaaat |
34796736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 34797137 - 34797053
Alignment:
| Q |
1 |
aaaaatcctttgctttagccctagagcagtcaacatccgggttgttctgaagcatatcaaagctgaaatagagaccaaaacagta |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34797137 |
aaaaatcctttgctttagccctagagcagtcaacatccgggttgttcttaagcatatcaaagctgaaatagagaccaaaacagta |
34797053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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