View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_42 (Length: 407)
Name: NF17203_high_42
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 35796175 - 35795801
Alignment:
| Q |
19 |
caaaaagggagctagagagatataattaaagttgttgccaggtagggtgctcttctctcatcctatctacttttcctaaaatttctacccattatgaggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35796175 |
caaaaagggagctagagagatataattaaagttgttgccaggtagggtgctcttctctcatcctatctacttttcctaaaatttctacccattatgaggt |
35796076 |
T |
|
| Q |
119 |
atagtggaactaagtactctctcaacttagtataaatagccatgtagttctctttttctctcaacctatttccaatcaaaagtggaagatttctcttaga |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35796075 |
atagtggaaccaagtactctctcaacttagtataaatagccatgtagttctctttgtctctcaacctatttccaatcaaaagtggaagatttctcttaga |
35795976 |
T |
|
| Q |
219 |
gtgagcttccacaatatggataatctaatatttacgataaggaatttatacactttggttcttttactttttgtactgtgttttaagccttctttttcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35795975 |
gtgagcttccacaatatggataatctaatatttaagataaggaatttatacactttggttcttttactttttgtactgtgttttaagccttctttttcat |
35795876 |
T |
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| Q |
319 |
ctagatcacataggcactattcgggtggtgatggaagaaaattgaggagttctggtgataatgttagtgatcttg |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35795875 |
ctagatcacataggcactattcgggtggtgatggaagaaaattgaggagttctggtgataatgttagtgatcttg |
35795801 |
T |
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